Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L05
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 181 1e-46
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 180 2e-46
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 52 1e-07
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 28 2.1
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 3.7
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 4.9
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 6.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 8.6
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 181 bits (440), Expect = 1e-46
Identities = 84/120 (70%), Positives = 94/120 (78%)
Frame = +1
Query: 163 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 342
L + EQL++L H GL ++KLR+AK EAP NEKP VKTHLRNMII
Sbjct: 35 LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMII 94
Query: 343 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 522
+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 95 LPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 102 LKXKRIFRKFTYRGVDLDQLL 164
L+ KR FR F YRGV+L+QLL
Sbjct: 15 LRKKRTFRTFAYRGVELEQLL 35
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 180 bits (439), Expect = 2e-46
Identities = 84/120 (70%), Positives = 94/120 (78%)
Frame = +1
Query: 163 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 342
L + EQL++L H GL ++KLR+AK EAP NEKP VKTHLRNMII
Sbjct: 34 LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMII 93
Query: 343 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 522
+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 94 LPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153
Score = 33.1 bits (72), Expect = 0.057
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 102 LKXKRIFRKFTYRGVDLDQLL 164
L+ KR FR F YRGV+L+QLL
Sbjct: 14 LRKKRSFRTFAYRGVELEQLL 34
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 52.0 bits (119), Expect = 1e-07
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1
Query: 313 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 459
+KT +R+ I+P MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 50 IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 280 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 381
K A P++KP + THL +++I VG + ++
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 375 NADN*TDHLGNDDHVSQVSLHDLWLLIR 292
N N T H+ ++ V +V++HD+W I+
Sbjct: 18 NVPNETKHIFDEISVKEVAVHDIWKRIQ 45
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 515 GMNLELCVAPIPGLPCFTGLYVTENS 438
G+N+ LCV PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 506 LELCVAPIPGLPCFTGLYVTE 444
LELC PG+P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +1
Query: 349 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 498
E+ + VG+YNGK F + + P+ + H L E ++ KP++ PG+ TH
Sbjct: 23 EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,790
Number of Sequences: 5004
Number of extensions: 37015
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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