Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L04
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.8  
05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    28   8.8  
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828...    28   8.8  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 268  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 366
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 632 DEKICYNYGIIKENEQFVM 688
           DE +C+ YG ++ENE +++
Sbjct: 459 DEVLCWLYGTVRENEDYIL 477


>04_04_0097 -
           22782031-22782122,22782504-22782570,22782769-22782861,
           22782981-22783034,22783163-22783214,22783346-22783413,
           22783532-22783711,22783843-22783935,22784585-22784665,
           22785011-22785091,22785204-22785331,22786502-22786643
          Length = 376

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 769 LGQHLQLSKQFCLRCWGKXREXGIVGVHYELFVFFDNSVIITYFLVKATIHHLNVVHFIF 590
           + +H+ LS QF +    +  E G +     +F F+D S I   F    T  H++ +HF+ 
Sbjct: 284 INEHIILSNQFSVTEHFRSSESGRIQAVPGVFFFYDLSPIKVTF----TEQHVSFLHFLT 339

Query: 589 N 587
           N
Sbjct: 340 N 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,211,152
Number of Sequences: 37544
Number of extensions: 382897
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)