Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L03
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   4e-20
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        35   0.11 
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.1  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 51/112 (45%), Positives = 63/112 (56%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDXXVAVTGEKISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 311
           M S +ELACVYSALIL D  VA+T +KI T++KAA ++V P+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 312 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 467
             + +G                                   SDDDMGFGLFD
Sbjct: 61  --LSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 311 DQVTDIDAFQGFGEQTWPIWXYIYSRRFQDGGN 213
           DQ+  I+ F+  G++ WP +  + S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 435 SDDDMGFGLFD 467
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,208
Number of Sequences: 59808
Number of extensions: 195220
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)