Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L02
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            30   2.1  
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 32/109 (29%), Positives = 42/109 (38%)
 Frame = +2

Query: 227 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPAGDXTNYGGRLD 406
           Q G G  FGT      GLFG AG N        G +TG  +G      +   T +GG   
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104

Query: 407 WANKNAEAAIDINRQIGGRSGMTATGSGVWDLDKNTRLSAGGMVSKEFG 553
            A  N       N    G    T TG+G++   +    + GG  +  FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGA--AFGGTSTSGFG 146


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 585 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 406
           S + P+SG+  P      PP+   VF S S  P PV   P  PP  +F   A S+ +   
Sbjct: 424 SVFAPSSGV--PTPVAAPPPS---VFASSSGVPTPVTAPPPAPPPSVF---APSSGVPTP 475

Query: 405 SRRPP*FVXSPA 370
              PP  V +P+
Sbjct: 476 VAAPPPSVFAPS 487



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = -1

Query: 585 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 406
           S +  +SG+  P   +  PP+   VF S S  P PVA  P  PP  +F   A S+ +   
Sbjct: 366 SVFASSSGV--PTPVKAPPPS---VFASSSGVPTPVAAPPPAPPPSVF---APSSGVPTP 417

Query: 405 SRRPP*FVXSPA 370
              PP  V +P+
Sbjct: 418 VAAPPPSVFAPS 429



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -1

Query: 585 SAWTPTSGLL*PNSFETIPPAER-RVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLA 409
           S + P+SG+  P      PPA    VF   S  P PV   P  PP  +F   A S+ +  
Sbjct: 522 SVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVF---APSSAVPT 576

Query: 408 QSRRPP*FVXSPAGPRTL 355
            +  PP    + + P  L
Sbjct: 577 PATAPPPVAATLSAPPPL 594


>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = +2

Query: 482 GSGVWDLDKNTRLSAGGMVSKEFGHRRPDVG-----VQAEFR--HDW*SEDPSRHHRSK 637
           G   WD+ K ++ S G  +S         +G     V  EFR  HD   ED S+HHR K
Sbjct: 4   GRWCWDISKLSQGSVGAAMSINLMAEFTSLGQSHDPVDDEFREQHDKVYEDDSKHHRLK 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,736,075
Number of Sequences: 59808
Number of extensions: 427246
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)