Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K24
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593...    29   3.8  
08_02_0796 - 21300251-21300373,21300846-21301721                       29   6.6  
07_01_0080 + 587674-588510                                             28   8.7  

>03_02_0149 +
           5933134-5933207,5935039-5935267,5935370-5935468,
           5935582-5935616,5935694-5935769,5936552-5936662,
           5937001-5937087,5937302-5937395,5937489-5937606,
           5938047-5938542,5939263-5939298,5940047-5940578,
           5940668-5940792
          Length = 703

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 684 LSPXPPXKXPXPPPXXPXAFLSRSXSTRXXXHVXPASP 797
           + P PP   P PPP  P   +SR+   R   +   A P
Sbjct: 591 MPPPPPKSMPPPPPKFPSNEMSRNEDRRSDLNKPMAPP 628


>08_02_0796 - 21300251-21300373,21300846-21301721
          Length = 332

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 678 LXLSPXPPXKXPXPPPXXPXAFLSRS 755
           L L P PP   P PPP  P   L R+
Sbjct: 100 LALPPPPPPPPPPPPPPQPQQHLPRT 125


>07_01_0080 + 587674-588510
          Length = 278

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 690 PXPPXKXPXPPPXXPXAFLSRS 755
           P PP   P PPP  P  F  RS
Sbjct: 106 PPPPPPPPPPPPPPPPLFTRRS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,664
Number of Sequences: 37544
Number of extensions: 182864
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)