Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K24
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5039| Best HMM Match : Dirigent (HMM E-Value=9.6)                   31   0.95 
SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)                31   0.95 
SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  

>SB_5039| Best HMM Match : Dirigent (HMM E-Value=9.6)
          Length = 249

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 185 TKTDGYGSPASKVLRVQVKLDDRXFTSVLLXDTISVSCTS 66
           T T+GYGSP   V++ +  LD     +V L DT+ +S TS
Sbjct: 112 TVTNGYGSPFFSVVKAKPHLDS-VIGTVSLEDTLDLSITS 150


>SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)
          Length = 601

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 185 TKTDGYGSPASKVLRVQVKLDDRXFTSVLLXDTISVSCTS 66
           T T+GYGSP   V++ +  LD     +V L DT+ +S TS
Sbjct: 464 TVTNGYGSPFFSVVKAKPHLDS-VIGTVSLEDTLDLSITS 502


>SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 185 TKTDGYGSPASKVLRVQVKLDDRXFTSVLLXDTISVSCTS 66
           T T+GYG+P   V++ +  L D    +V L DT+ +S TS
Sbjct: 253 TVTNGYGAPFFSVVKAKPHL-DLVIGTVSLEDTLDLSITS 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,958,441
Number of Sequences: 59808
Number of extensions: 185087
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)