Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_K22
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 30 2.2
12_01_0135 + 1042889-1044255,1045368-1045809 30 2.9
08_02_1198 + 25204896-25206755 30 2.9
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 30 2.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 30 2.9
07_03_1612 - 28140155-28140781,28140913-28141182 29 5.1
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.7
04_04_0103 + 22808670-22810007 29 6.7
09_04_0584 - 18714461-18716296 28 8.8
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 28 8.8
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 28 8.8
01_02_0108 - 11200964-11201338 28 8.8
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 182 RLRTGAT-EDRPPCRSTKRNEHFQPRXKEXSRKRPTALQXATNGQSTPKESPEPQIQQET 358
+L G+ E RPP + RN H + + ++++P T+G +P SP P
Sbjct: 1079 KLENGSDIEARPP---SARNNHEKSSWLQTAKEQPAPPPSVTSGNPSPSPSPSP----TA 1131
Query: 359 PAAAERAPKADS 394
P A R+P S
Sbjct: 1132 PTNAWRSPLLSS 1143
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 29.9 bits (64), Expect = 2.9
Identities = 27/81 (33%), Positives = 33/81 (40%)
Frame = +2
Query: 146 APPPWWWSH*HLRLRTGATEDRPPCRSTKRNEHFQPRXKEXSRKRPTALQXATNGQSTPK 325
APPP SH L L AT PP S P + R+ P + N
Sbjct: 135 APPPPPPSHPAL-LPPDATAPPPPPTSVAALPPPPPAQPDKRRREPQCQEQEPN----QP 189
Query: 326 ESPEPQIQQETPAAAERAPKA 388
+SP+P +ET AAA A A
Sbjct: 190 QSPKPPTAEETAAAAAAAAAA 210
>08_02_1198 + 25204896-25206755
Length = 619
Score = 29.9 bits (64), Expect = 2.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 113 PQXRSSSIKQGAPPPWW 163
PQ R + +G PPPWW
Sbjct: 190 PQQRKYPLDKGVPPPWW 206
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 126 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSH 254
A L +R RPP GG T + + P+ P AT F H
Sbjct: 171 ASLYTRAPRPPRGGKTYLLTAAPQCPYPDASLAAALATGLFDH 213
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 135 SSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGTRXRAES 278
S R+ +P P PPR R V S T+ + HG+ R+ S
Sbjct: 132 SGRLAKPLSSCSAAATPPAPTPPRAARHDVLGSGTANYGHGSIVRSRS 179
>07_03_1612 - 28140155-28140781,28140913-28141182
Length = 298
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 286 RWSLSARLLVPWLKVLVALGGTARRPVLGGSGSESKMLV 170
RW L R+++PW++ G T RP+L G++S +++
Sbjct: 203 RWELRHRVVLPWMR-----GMTLERPLLIEGGNDSDVIM 236
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -2
Query: 229 GGTARRPVLGGSGSESKMLV*PPPGGRSTLLDR 131
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGG-GGALARPPGGGRGGALGR 171
>04_04_0103 + 22808670-22810007
Length = 445
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 113 PQXRSSSIKQGAPPPWW 163
P RS + +G PPPWW
Sbjct: 197 PPQRSFPLDRGLPPPWW 213
>09_04_0584 - 18714461-18716296
Length = 611
Score = 28.3 bits (60), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 113 PQXRSSSIKQGAPPPWW 163
P R +++G PPPWW
Sbjct: 192 PPQRKYPLERGTPPPWW 208
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/49 (42%), Positives = 24/49 (48%)
Frame = -2
Query: 232 LGGTARRPVLGGSGSESKMLV*PPPGGRSTLLDRRAPXLRPTLNGVEXI 86
LG TAR P S + + +V PPP RST R A RPT V I
Sbjct: 124 LGRTARSP----SPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPI 168
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +2
Query: 230 KRNEHFQPRXKEXSRKRPTALQXATNGQSTPKESPEPQIQQETPAAAERAPK 385
K N + + +K T ++P++SP P Q TP + +R K
Sbjct: 565 KENSELRQQLARQQQKLLTVQAQTLASNASPQQSPAPSAQISTPCSTQRKVK 616
>01_02_0108 - 11200964-11201338
Length = 124
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 87 MXSTPFNVGLNXGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 245
M ST NVGL+ A +S ++RP G +F P R G AV S +T
Sbjct: 1 MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF---PRVGRGGFAAVRASGPAT 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,008,344
Number of Sequences: 37544
Number of extensions: 413568
Number of successful extensions: 1522
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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