Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K22
         (902 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               30   2.9  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                30   2.9  
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.8  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   28   9.0  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   9.0  

>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 182  RLRTGATEDRPPCRSTKRNEHFQPRXKEXSRKRPTALQXATNGQSTPKESPEP 340
            R+ T  ++DRPP  S +     +       RK    L   ++  S+P  SP+P
Sbjct: 962  RMETTQSKDRPPAESDRNRSWDKQPSPRIGRKNQQQLTIPSDSSSSPSTSPQP 1014


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 206 DRPPCRSTKRNEHFQPRXKEXSRKRPTALQXATNGQ 313
           D PP R+T RN+  + R    ++ +P  LQ   + Q
Sbjct: 358 DEPPSRTTNRNKRLKSRDDSYTKSKPKKLQSPRSTQ 393


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 104  QRWPQXRSSSIKQGAPPPWWWSH 172
            QRW +   S+ ++G PPP+W  H
Sbjct: 988  QRWDEWDRSTGERGPPPPYWDEH 1010


>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 236 NEHFQPRXKEXSRKRPTALQXATNGQSTPKESPEPQIQQET 358
           NE  QP     SR++PT+L  A+ G  TP      Q   +T
Sbjct: 149 NETEQPATPAPSRQKPTSLNGASLGYDTPAFQAGAQASTDT 189


>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 248 QPRXKEXSRKRPTALQXATNGQSTPKESPEPQIQQETPAAAERAPKA 388
           +PR  + S K  T  +    GQ   K   +PQI Q T      AP A
Sbjct: 446 RPREADTSFKEDTDAKKTKGGQYQAKSKKKPQINQCTEKQPASAPSA 492


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 183  DSEPEPPRTGRRAVPPSATSTF-SHGTRXRAES 278
            + EP PPRT  R+ PPS +S + +  T  RA S
Sbjct: 2020 EREPLPPRTKMRSRPPSMSSIYGTPSTERRAGS 2052


>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 169

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 251 PRXKEXSRKRPTALQXATNGQSTPKESPEPQIQQETPAAAERAPK 385
           PR K     +P  L  ++   + P   P+P +++  P A ++AP+
Sbjct: 23  PRPKPRPPAKPLILPKSSTISTKPPIKPKPAVRRVPPPAPKKAPE 67


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 144 VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 239
           V   P       F  E EPP+  R+  PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,041,420
Number of Sequences: 59808
Number of extensions: 432033
Number of successful extensions: 1202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)