Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K22
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    32   0.49 
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    28   7.9  
AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 72  KSKNKMXSTPFNVGLNXGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFS 251
           K KN   +  FN   N G + +     P     T++ ++   PP+TGR+ + P+  + F 
Sbjct: 288 KYKNNYKAPEFNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPFQ 345

Query: 252 H 254
           +
Sbjct: 346 N 346


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 501 LAVSLYNQIFD---FHLTHIMSQICIEAKFFLR 590
           LA+SL N  FD   + LT  + QIC    FFLR
Sbjct: 66  LALSLLNLFFDIFYYRLTLFVPQICESFSFFLR 98


>AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical
           protein F58D5.5 protein.
          Length = 159

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 269 SRKRPTALQXATNGQSTPKESPEPQIQQETPAAAERAPKADS 394
           S  RP+     ++ Q+TPK S  P+ QQ  P   +R  ++ S
Sbjct: 14  SSSRPSGGGGQSSHQTTPKSSGNPRQQQAQPRHRQRKAQSSS 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,346
Number of Sequences: 27780
Number of extensions: 326154
Number of successful extensions: 1126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)