Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K21
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   6.8  

>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 354 FSIFYEKMREEAXALFKLFYYAKDFECFYKTACYARVYMNQXXVLIRLLHSYYPALRHRQ 533
           F++ YE  RE A + FK+     + +  Y+     +    Q    IR+   Y PA +HR+
Sbjct: 725 FALHYEGSRESAVSAFKMGKSRAEIQRAYRERKKGKDSNWQQNESIRVQKYYTPASKHRR 784

Query: 534 LRS 542
           L+S
Sbjct: 785 LKS 787


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 257 QHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEGRSXRAVQAVLLCQRF*MF 436
           Q  G  G + + E + K   D+QG++PS    + D+ R  +  S     AV+L Q    F
Sbjct: 208 QTAGDSGGISREEFITKIASDIQGKLPS----LFDVDRVRKNLSEITPTAVVLLQELDRF 263

Query: 437 LQNSMLRQ 460
             N ++R+
Sbjct: 264 --NVLIRR 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,444,176
Number of Sequences: 59808
Number of extensions: 381705
Number of successful extensions: 715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)