Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K21
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 396 LFKLFYYAKDFECFYKTACYARVYMNQXXVLI-RLLH-SYYPALR 524
           L  +  Y K FECF+K +   R+ + +  +L+ ++LH S+Y   R
Sbjct: 200 LLTITEYIKTFECFHKISSNDRLVLTRHIILMCKILHESHYAVSR 244


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 284 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQXLLLLFDERSVNRCC 144
           + +  GL  +      +LS+IV L+    + +   Q LLLLF  ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 284 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQXLLLLFDERSVNRCC 144
           + +  GL  +      +LS+IV L+    + +   Q LLLLF  ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,729
Number of Sequences: 27780
Number of extensions: 293270
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)