Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K15
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.13 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   8.3  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/67 (26%), Positives = 21/67 (31%)
 Frame = -3

Query: 451 PP*XVXXPPGPKTXXP*AXPVSLPRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPPXCXXQ 272
           PP     PP P    P    +  P          P+ P  P    P  PK  PPP     
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210

Query: 271 VTSRGXR 251
           V +   R
Sbjct: 211 VANTSSR 217


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 717 IMGQXXTXGATXYGIGGEVITNHGG 643
           IM       A  YG+ G V++NHGG
Sbjct: 279 IMNVPDAKKAVEYGMQGIVVSNHGG 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,082
Number of Sequences: 5004
Number of extensions: 20315
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)