Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K15
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    35   0.100
11_06_0610 - 25449085-25453284                                         31   0.93 
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    28   8.7  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    28   8.7  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    28   8.7  

>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
 Frame = -3

Query: 550 HTP-EPDAXIPXXPPXCLFRSIVAXAFXFAQSRRPP*XVXXPPGPKTXXP*AXPVSL--- 383
           H+P +P A  P  PP  L  +I   A     S  P      PP P T  P + P  L   
Sbjct: 213 HSPSKPPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQRPPAPATKPPPSFPPQLAPT 272

Query: 382 -------PRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPPXC 281
                  P  +       PA P       PK   + PPP C
Sbjct: 273 MPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSSPPPPC 313


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 30/103 (29%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
 Frame = -3

Query: 586  PPAEKWXXXSRSHTPEPDAXIPXXPPXCLFRSIVAXAFXF---AQSRRPP*XVXXPPGPK 416
            PPA          +P P A +   PP        A         +S  PP  V  PP P 
Sbjct: 1218 PPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPV 1277

Query: 415  TXXP*AXPVSLPRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPP 287
               P   PVSLP   +K        P  P    P   K  PPP
Sbjct: 1278 KSLPPPAPVSLPPPVVK-----SLPPPAPVSLPPPAVKPLPPP 1315



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = -3

Query: 451  PP*XVXXPPGPKTXXP*AXPVSLPRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPP 287
            PP  V  PP P+   P   PV LP   +K        P  P    P   K+ PPP
Sbjct: 1138 PPVPVSSPPPPEKSPPPPAPVILPPPPIK-----SPPPPAPVISPPPPVKSPPPP 1187



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = -3

Query: 463  QSRRPP*XVXXPPGPKTXXP*AXPVSLPRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPP 287
            +S  PP  V  PP P    P   PV LP   +K        P  P    P   K+ PPP
Sbjct: 1166 KSPPPPAPVISPPPPVKSPPPPAPVILPPPPVK-----SPPPPAPVISPPPPVKSPPPP 1219



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/59 (32%), Positives = 23/59 (38%)
 Frame = -3

Query: 463  QSRRPP*XVXXPPGPKTXXP*AXPVSLPRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPP 287
            +S  PP  V  PP P    P   PV LP   +K      + P       P  P+  PPP
Sbjct: 1198 KSPPPPAPVISPPPPVKSPPPPAPVILPPPPVK------SPPPPAPVISPPPPEKSPPP 1250


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
 Frame = -3

Query: 544 PEPDAXIPXXPPXCLFRSIVAXAFXFAQSRRPP*XVXXPPGPKTXXP*AXPVSLPRSSLK 365
           P P    P   P CL   I+  A  F  S  PP  +  PP P    P   P   P   + 
Sbjct: 375 PNPPPPPPPMSPSCLLPPII-PAPTFTYSSPPPPPLYYPP-PPDISPSPPPSVTPLPPVV 432

Query: 364 XXXX*PAXPKXP-XXXXPKXPKTXPPP 287
                   P  P     P  P+  P P
Sbjct: 433 YPSPPEVTPSPPEIAPYPSPPEIVPSP 459


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -3

Query: 463 QSRRPP*XVXXPPGPKTXXP*AXPVSLPRSSLKXXXX*PAXPKXPXXXXPKXPKTXPPP 287
           Q+  PP      P P+   P A   + P    K     P  P+ P    P   KT PPP
Sbjct: 573 QAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTG--PGPPRPPPPAMPGSSKTRPPP 629


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/79 (25%), Positives = 30/79 (37%)
 Frame = -3

Query: 640 SAXXPTSGLX*PNXFETXPPAEKWXXXSRSHTPEPDAXIPXXPPXCLFRSIVAXAFXFAQ 461
           +A  P+  L  P  +   PP + +   S    P P +  P  PP  L R +   A+    
Sbjct: 167 AAPSPSYALP-PAGYPAVPPYQSYPA-SHVPAPYPTSAYPHPPPSLLARDVEHAAYPPTS 224

Query: 460 SRRPP*XVXXPPGPKTXXP 404
           +  PP      P  +T  P
Sbjct: 225 TTYPPQPYPPQPQGQTYPP 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,484
Number of Sequences: 37544
Number of extensions: 217752
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)