Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_K13
(966 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.32
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.56
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 29 0.74
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.98
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 4.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 9.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.1
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 716 PXXPXXPPPPPXHXPXTPXXPHPPSP 793
P P PPPPP P P P PP P
Sbjct: 6 PGNPPPPPPPPGFEP--PSQPPPPPP 29
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 725 PXXPPPPPXHXPXTPXXPHPP 787
P PPPP P P P PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 713 APXXPXXPPPPPXHXPXTPXXPHPPSP 793
A P PPPPP P PP P
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 777 PTPLPLXAXXLXPPPXPPPPXXPXXS 854
PT P A L PP PPPP P S
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQS 250
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 29.5 bits (63), Expect = 0.74
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 166 LRLQRSSAICWKCGVXCPVW*ST 234
LR QR + +C+ CG P W ST
Sbjct: 15 LRSQRDNKVCFDCGAKNPTWSST 37
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.98
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +2
Query: 686 PPPXSXLXRAPXXPXXPPPPPXHXPXTPXXPHPP 787
PPP + + P P PPP P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 29.1 bits (62), Expect = 0.98
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 686 PPPXSXLXRAPXXPXXPPPPPXHXPXTPXXPHPPSPXXXA 805
PPP + P PPPPP P P PP P A
Sbjct: 752 PPPAPIMG----GPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 777 PTPLPLXAXXLXPPPXPPPP 836
P P+P A + PP PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 686 PPPXSXLXRAPXXPXXPPPPPXHXPXTPXXPHPPSP 793
P P AP PPPPP P PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 777 PTPLPLXAXXLXPPPXPPPP 836
P P P PPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 777 PTPLPLXAXXLXPPPXPPPP 836
P P P A PPP PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 689 PPXSXLXRAPXXPXXPPPPPXHXPXTPXXPHPPSPXXXA 805
PP P P PPPP P P P P A
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 686 PPPXSXLXRAPXXPXXPPPPPXHXPXTPXXPHP 784
PPP S P P PPPP P P+P
Sbjct: 1715 PPPPSA-PPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 689 PPXSXLXRAPXXPXXPPPPPXHXPXTPXXPHPPSP 793
PP AP P PPP P PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +2
Query: 686 PPPXSXLXRAPXXPXXPPPP--PXHXPXTPXXPHPPSPXXXA 805
PP S P PPPP P P P PP P A
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 689 PPXSXLXRAPXXPXXPPPPPXHXP 760
PP + P P PPPP H P
Sbjct: 214 PPKFRHKKVPRGPPSPPPPVLHSP 237
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = +2
Query: 686 PPPXSXLX---RAPXXPXXPPPPPXHXPXTPXXPHPPSP 793
P P S L AP P PPP P P P PP P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKA-PPIP 168
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 792 GEGGWGXXGVXGXWXG-GGGGXXGXXGAR 709
G GG+G G G G GGG G GAR
Sbjct: 452 GRGGFGGRGGFGGRGGFGGGRGRGRGGAR 480
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +2
Query: 686 PPPXSXLXRA-PXXPXX----PPPPPXHXPXTPXXPHPPS 790
PPP S + P P PPPPP P T P P S
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,374
Number of Sequences: 5004
Number of extensions: 34345
Number of successful extensions: 248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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