Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K13
         (966 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 813  PPPXPPPP 836
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.4 bits (43), Expect(2) = 1.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 802  RXSXPPXXPPPP 837
            R   PP  PPPP
Sbjct: 1351 RQQQPPPPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 1.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 916  PPPXTPPPT 942
            PPP  PPP+
Sbjct: 1355 PPPPPPPPS 1363


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 734 PPPPPXHXPXTPXXPHPPSP 793
           P P P   P  P    PP+P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNP 42


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 67  SVFVPQXGSLVLYVFCLGL 123
           S F  Q G  V+Y  C+GL
Sbjct: 137 STFFDQLGQEVIYTACVGL 155


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 716 PXXPXXPPPPP 748
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,956
Number of Sequences: 438
Number of extensions: 5536
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)