Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_K12
(908 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81; Eukary... 85 3e-15
UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33; Eukary... 73 1e-11
UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15 ... 62 3e-08
UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1; ... 60 8e-08
UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellula... 60 1e-07
UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6; Alveola... 54 4e-06
UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=... 48 3e-04
UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2; Cryptos... 46 0.001
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 43 0.012
UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S riboso... 40 0.066
UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza sativa... 38 0.27
UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S riboso... 37 0.62
UniRef50_Q7NBF8 Cluster: Putative uncharacterized protein; n=1; ... 35 3.3
>UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81;
Eukaryota|Rep: 60S ribosomal protein L35 - Homo sapiens
(Human)
Length = 123
Score = 84.6 bits (200), Expect = 3e-15
Identities = 45/87 (51%), Positives = 53/87 (60%)
Frame = +3
Query: 87 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 266
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 267 YHQKMKVNLRNHYKNKKYKPLXFKSQE 347
+Q K NLR YK KKYKPL + ++
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK 87
Score = 54.8 bits (126), Expect = 3e-06
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 456
R KKTRAMR+ L KHE +KT+K+ RK+ L+P R YAVKA
Sbjct: 84 RPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123
>UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33;
Eukaryota|Rep: 60S ribosomal protein L35 -
Caenorhabditis elegans
Length = 123
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/84 (46%), Positives = 47/84 (55%)
Frame = +3
Query: 87 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 266
M K+KC LR + LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 267 YHQKMKVNLRNHYKNKKYKPLXFK 338
+Q K LR Y + KYKP+ +
Sbjct: 61 INQTQKQELRKFYADHKYKPIDLR 84
Score = 36.3 bits (80), Expect = 1.1
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 456
R KKTRA+R+ LT HE +++ K+ K R +AVKA
Sbjct: 84 RLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15
protein - Plasmodium falciparum
Length = 124
Score = 61.7 bits (143), Expect = 3e-08
Identities = 36/86 (41%), Positives = 45/86 (52%)
Frame = +3
Query: 87 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 266
M VK ELRT + LR++K G A K SKI VRK +ARV V
Sbjct: 1 MSNVKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSA-KNSKIHGVRKNVARVLTV 59
Query: 267 YHQKMKVNLRNHYKNKKYKPLXFKSQ 344
Y+QK K+ LR YKNKK+KP + +
Sbjct: 60 YNQKRKMELRQLYKNKKFKPYNLRKK 85
>UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 218
Score = 60.1 bits (139), Expect = 8e-08
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +3
Query: 96 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 275
VK EL++K NLRV KV GG +SK+ +I +RK IARV V +Q
Sbjct: 77 VKTFELQSKSKTDLTKQLEELKTELLNLRVQKVAGGSSSKILRINSLRKDIARVLTVMNQ 136
Query: 276 KMKVNLRNHYKNKKYKPLXFKSQE 347
K + NLR YK K PL ++++
Sbjct: 137 KQRANLREFYKGKSQIPLDLRAKK 160
>UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellular
organisms|Rep: 60S ribosomal protein L35 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 203
Score = 59.7 bits (138), Expect = 1e-07
Identities = 37/118 (31%), Positives = 54/118 (45%)
Frame = +3
Query: 78 TVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARV 257
T+ KVK +L K + LRV K+ G +SK +I VRK+IARV
Sbjct: 61 TMSTSKVKAGQLWGKSKEELSKQLEELKTELSQLRVQKIAAGASSKTQRIHDVRKSIARV 120
Query: 258 YIVYHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 431
V + + LR YKNKKY PL + + + + + E++ +KEI P
Sbjct: 121 LTVINANQRAQLRLFYKNKKYTPLDLRPRLTRALRRRLTKHEATLKTEKQRKKEIHFP 178
Score = 48.4 bits (110), Expect = 3e-04
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 453
R + TRA+R+ LTKHEA +KT K+ +K+ FP R YAVK
Sbjct: 147 RPRLTRALRRRLTKHEATLKTEKQRKKEIHFPQRKYAVK 185
>UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6;
Alveolata|Rep: 60S ribosomal protein L35 - Theileria
annulata
Length = 142
Score = 54.4 bits (125), Expect = 4e-06
Identities = 31/82 (37%), Positives = 40/82 (48%)
Frame = +3
Query: 93 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 272
K++ ELR K RV+KVT SKLSKI +VRKA+A+V VY+
Sbjct: 22 KLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYN 81
Query: 273 QKMKVNLRNHYKNKKYKPLXFK 338
Q+ K R YK PL +
Sbjct: 82 QRKKEEARKKYKKLSKTPLNLR 103
Score = 34.3 bits (75), Expect = 4.4
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 456
R K TRA RK LT + +KT KE ++ P R YA+ A
Sbjct: 103 RPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYALLA 142
>UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=5;
Trypanosomatidae|Rep: 60S ribosomal protein L35,
putative - Leishmania major
Length = 127
Score = 48.0 bits (109), Expect = 3e-04
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 96 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 275
+K +LR K + LRV + TGG ++L +IR +RK+IAR+ V +Q
Sbjct: 5 MKIKDLREKSKDDLLKTLTEYKKELSQLRVVQQTGGAETRLGRIRPIRKSIARILTVLNQ 64
Query: 276 KMKVNLRNHYKNKKYK 323
+ NL+ Y ++K +
Sbjct: 65 NERSNLKMFYADRKLR 80
Score = 36.7 bits (81), Expect = 0.82
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 453
R K T R AL ++E KT +++R+ FP RVYAVK
Sbjct: 88 RTKLTHRRRLALKENEKNRKTSRQMRQAHKFPKRVYAVK 126
>UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L35 -
Cryptosporidium hominis
Length = 126
Score = 46.0 bits (104), Expect = 0.001
Identities = 25/86 (29%), Positives = 44/86 (51%)
Frame = +3
Query: 174 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQEDP 353
+LRV + TG +KLS+I VVRK IAR+ + Q+ +LR + K+ PL + +
Sbjct: 33 SLRVIQSTGTAPNKLSRINVVRKGIARILTILSQRNIKSLREKHAGSKFMPLDLRKKLTR 92
Query: 354 CYAQGSY*TRSKDQDEERDQKEISLP 431
+ ++K + +K ++ P
Sbjct: 93 AKRRALTPQQAKKMTVKASKKALNFP 118
Score = 35.1 bits (77), Expect = 2.5
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 456
R K TRA R+ALT +AK T K +K FP R +A+ A
Sbjct: 87 RKKLTRAKRRALTPQQAKKMTVKASKKALNFPKRKFAIIA 126
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 42.7 bits (96), Expect = 0.012
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +2
Query: 554 DPDMIRYIDEFGQXTTRMQ 610
DPDMIRYIDEFGQ TTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Homo sapiens|Rep: PREDICTED: similar
to 60S ribosomal protein L35 - Homo sapiens
Length = 106
Score = 40.3 bits (90), Expect = 0.066
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 337 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 456
R KKTRA+R+ L+KHE + +K+ + + L P R AVKA
Sbjct: 61 RPKKTRAVRRPLSKHEENLTIKKQQQSEQLSPVRKCAVKA 100
>UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza
sativa|Rep: Os06g0732000 protein - Oryza sativa subsp.
japonica (Rice)
Length = 290
Score = 38.3 bits (85), Expect = 0.27
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 75 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 254
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 255 VY 260
Y
Sbjct: 163 AY 164
>UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Bos taurus|Rep: PREDICTED: similar to
60S ribosomal protein L35 - Bos taurus
Length = 98
Score = 37.1 bits (82), Expect = 0.62
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +3
Query: 177 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFK 338
L + K+T V+SK SKI V K I+R+ V +Q K NLR KYKPL K
Sbjct: 17 LGIIKMTSSVSSKPSKILGVCKFISRLLTVVNQTQKENLR------KYKPLQSK 64
>UniRef50_Q7NBF8 Cluster: Putative uncharacterized protein; n=1;
Mycoplasma gallisepticum|Rep: Putative uncharacterized
protein - Mycoplasma gallisepticum
Length = 1931
Score = 34.7 bits (76), Expect = 3.3
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Frame = +3
Query: 36 LRFLLFKVRFEENVTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNL-RVAKVTGGVAS 212
LR+LL K + NV K KV+ + + +V + +
Sbjct: 1293 LRYLLEKESYNVNVNKKDLKVRIEHYQRLERAIKNEQHKLNNQKNNFFNKVELLNDQLNK 1352
Query: 213 KLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKD 392
K SKI ++R I Y Q+ ++ L +KN + + K+QE+ + Q + + +K
Sbjct: 1353 KSSKIALLRSKIYNTYKQQQQQKQILLEEKHKNSQLRKSLLKTQEE-LHQQKAQFSIAKK 1411
Query: 393 QDEE--RDQKEI 422
Q+E+ ++QK++
Sbjct: 1412 QEEKKLKNQKDL 1423
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,177,403
Number of Sequences: 1657284
Number of extensions: 9894612
Number of successful extensions: 19574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19563
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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