Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K12
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    67   2e-11
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    38   0.008

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 37/87 (42%), Positives = 48/87 (55%)
 Frame = +3

Query: 87  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 266
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 267 YHQKMKVNLRNHYKNKKYKPLXFKSQE 347
             QK +  LR  YK K   PL  + ++
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKK 87



 Score = 32.3 bits (70), Expect = 0.55
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 18/58 (31%)
 Frame = +1

Query: 337 RAKKTRAMRKALTKH------------------EAKIKTRKEIRKKSLFPPRVYAVKA 456
           R KKTRA+R+ LTKH                  +  +KT +E +++  FP R YA+KA
Sbjct: 84  RPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +3

Query: 75  VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 254
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 255 VY 260
            Y
Sbjct: 163 AY 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,032
Number of Sequences: 37544
Number of extensions: 287540
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)