Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K11
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   4.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.6  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   6.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   8.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   8.1  

>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 342 PYLSLTGSGICRWAWSEAL 286
           P+L L GS I R+ WSE +
Sbjct: 25  PFLQLKGSSILRFEWSEEM 43


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 14   TDSL*WNSLKILQFAQ-YSV-VPRRLVSYYNVNKTFNICCQF 133
            T+SL  NSLKI + A  Y + V  ++++Y N   TFN C  F
Sbjct: 1164 TESL-INSLKIFKKAGCYKLNVEHKIITYQNYEMTFNDCDAF 1204


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 321 NQSRIDRGLFHRYSIAKLEIPSNLED 398
           N+S +++ +FHR +IA   +  N+E+
Sbjct: 769 NESLVEKWIFHRLNIAAAAMNKNMEE 794


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +3

Query: 375 EIPSNLEDAAKLNVKFFFENAPRRLRIRRYPFSVLA 482
           ++ ++L+ AA L+ KF+  ++P +  +  YP +VL+
Sbjct: 580 KLQAHLKLAAPLHDKFYVPHSPPKYTMETYPNNVLS 615


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 552 YIWILSRNPILNDVSKELATKPLSQL 629
           Y+ IL  NP+LN  SK +  K  S L
Sbjct: 244 YLLILLENPLLNSKSKNIVNKSSSIL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,789
Number of Sequences: 5004
Number of extensions: 60353
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)