Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K11
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_48388| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   30   2.1  

>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 348 FHRYSIAKLEIPSNLEDAAKLNVKFFFENAPRRLRIRRYP 467
           +HRY  A+ ++ SNL+D  KL     F   P   R  +YP
Sbjct: 164 YHRYCAARADVDSNLDDVCKLLRSTGFSVVPGAKRPAKYP 203


>SB_48388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 509 DGSVILVISGQNGKWISSYPQSP 441
           +G+V+L++ GQ G W+ S+P  P
Sbjct: 95  EGNVLLILVGQQGFWVDSFPDRP 117


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 12/209 (5%)
 Frame = +3

Query: 81  DSFRITMLIKHLIFAASFCV--VHAYFTLPGKCPADVQLQQEFRLADFFGKWYQA----- 239
           D  RI+  +KH +FA  +        FT+  +     Q    +RL ++ G W +      
Sbjct: 155 DRVRISK-VKH-VFAKVYIPNWTEEVFTVGQRYNNTTQKNYAYRLREYDGSWLEGRFYEP 212

Query: 240 --YHYSSDEQQQNNCSVLELQTKPSGIYLNQSRIDRGLFHRYSIAKLEIPSN-LEDAAKL 410
              H S DEQ+        ++T+  G Y  +    +   H + +    +PSN LE A   
Sbjct: 213 ELQHVSLDEQRDLFRIERVIRTRGKGRY--EEYFVQWHQHHFHVT---LPSNALEGALPG 267

Query: 411 NVKFFFENAPRRLRIRRYPFSVLATNYQYYATVYTCQYSPLTDKHFIYIWI-LSRNPILN 587
           N + F    P+ L +R   + V  T+  Y  T      S    +H  +IW+ + +   L 
Sbjct: 268 NTRNFTIRTPKTLDLRDGDWEVGLTSLIYPNT----WLSFALHEHIFWIWVKVPKKAWLR 323

Query: 588 D-VSKELATKPLSQLGXDVTKIKKDDLTR 671
           D  +   A    S +  +  +IK DD  R
Sbjct: 324 DNQNNPNAVADESNIVHEWYEIKLDDFVR 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,952,491
Number of Sequences: 59808
Number of extensions: 420811
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)