Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K11
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z82260-14|CAB05142.2|  521|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z73104-10|CAA97437.2|  521|Caenorhabditis elegans Hypothetical p...    29   5.8  
AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute (pl...    29   5.8  
AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute (pl...    29   5.8  

>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 124 LPVFVLFTHT--SLYQENVRQMFNYNRNSDWLISSVNGIKLITIPA 255
           L V +L  H   S+Y+ N   +    RN DW +    G+K I  PA
Sbjct: 9   LVVLLLMCHARKSVYRRNSPSLRRLTRNYDWEVDEHGGLKPIINPA 54


>Z82260-14|CAB05142.2|  521|Caenorhabditis elegans Hypothetical
           protein C32H11.1 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +3

Query: 270 NNCSVLELQTKPSGIYLNQSRIDRGL--FHRYSIAKLEIPSNLEDAAKLNVKFFFENAPR 443
           NN    +  T   G  +    +D G   F++ ++       N +   K NVK+F  N P 
Sbjct: 343 NNADEAKWSTVYDGRNIKVQSMDYGRTSFYQDTMETFTTEPNTQMYFKFNVKYFDVNGPT 402

Query: 444 RLRIRRYPFSVLATNYQYYATVYTCQYS 527
            L I+ Y  + +  +  Y AT     Y+
Sbjct: 403 SLAIKVYNNAKIVYSETYTATNLPTPYN 430


>Z73104-10|CAA97437.2|  521|Caenorhabditis elegans Hypothetical
           protein C32H11.1 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +3

Query: 270 NNCSVLELQTKPSGIYLNQSRIDRGL--FHRYSIAKLEIPSNLEDAAKLNVKFFFENAPR 443
           NN    +  T   G  +    +D G   F++ ++       N +   K NVK+F  N P 
Sbjct: 343 NNADEAKWSTVYDGRNIKVQSMDYGRTSFYQDTMETFTTEPNTQMYFKFNVKYFDVNGPT 402

Query: 444 RLRIRRYPFSVLATNYQYYATVYTCQYS 527
            L I+ Y  + +  +  Y AT     Y+
Sbjct: 403 SLAIKVYNNAKIVYSETYTATNLPTPYN 430


>AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform b protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  HEDSFRITMLIKHLIFAASFCVVHAYFTLPGKCPADVQLQQEFRLADFFGKWYQAYHYS 251
           HE    I ++++HL       V  ++FT PG     +Q+ QE +L      W+  +H S
Sbjct: 176 HEAVQSIDVILRHLPSLKYTPVGRSFFTPPGVMKPGMQMHQESKLGGGREVWF-GFHQS 233


>AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform a protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  HEDSFRITMLIKHLIFAASFCVVHAYFTLPGKCPADVQLQQEFRLADFFGKWYQAYHYS 251
           HE    I ++++HL       V  ++FT PG     +Q+ QE +L      W+  +H S
Sbjct: 195 HEAVQSIDVILRHLPSLKYTPVGRSFFTPPGVMKPGMQMHQESKLGGGREVWF-GFHQS 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,727
Number of Sequences: 27780
Number of extensions: 331609
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)