Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K11
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   2.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 169 NVRQMFNYNRNSDWLISSVNGIKLITIP 252
           N    +NYN N   L  ++N I+ I IP
Sbjct: 93  NNNYKYNYNNNCKKLYYNINYIEQIPIP 120


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 546 FIYIWILSRNPILNDVSKELATKPLSQLGXDVTKIKKDD 662
           F+Y    +R  +  DV K    +  + LG  +TKI K D
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 546 FIYIWILSRNPILNDVSKELATKPLSQLGXDVTKIKKDD 662
           F+Y    +R  +  DV K    +  + LG  +TKI K D
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 554 HLDFIXESNLERCVERISY 610
           H++ I   N + C +RI+Y
Sbjct: 210 HMEVIKIKNFDNCDQRINY 228


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 330 LTGSGICRWAWSEALGPSNYSAAVHRWNSD 241
           L G G+C+W   E +   +Y A +   N++
Sbjct: 277 LYGHGVCKWPGCEVI-CEDYQAFLKHLNTE 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,571
Number of Sequences: 438
Number of extensions: 4549
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)