Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K11
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    34   0.14 
At4g01320.1 68417.m00172 CAAX protease, putative (STE24) contain...    31   1.3  
At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger) fa...    30   2.3  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
 Frame = +3

Query: 180 DVQLQQEFRLADFFGKWYQAYHYSSDEQQQNNCSVLELQT-KPSGIY--LNQ--SRIDRG 344
           ++++ +   +  + G+WY+   + S  Q +N        T  P G    LN+  S   RG
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 345 LFHRYSIAKLEIPSNLEDAAKLNVKFFFENAPRRLRIRRYPFSVLATNYQYYATVYTCQY 524
            F   S  K +  S   D AKL VKF+    P  L     P   +  +Y         Q+
Sbjct: 66  -FIEGSAYKADPKS---DEAKLKVKFY---VPPFL-----PIIPVTGDYWVLYIDPDYQH 113

Query: 525 SPLTDKHFIYIWILSRNPILNDVS-KELATKPLSQLGXDVTKIKKDDLTRCXPK 683
           + +      Y+WILSR   + + + K+L  K + + G D++K+ K   +   P+
Sbjct: 114 ALIGQPSRSYLWILSRTAQMEEETYKQLVEKAVEE-GYDISKLHKTPQSDTPPE 166


>At4g01320.1 68417.m00172 CAAX protease, putative (STE24) contains
           Pfam domain, PF01435: Peptidase family M48
          Length = 424

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 63  IPLSHEDSFRITMLIKHLIFAASFCVVHAYFTLPGKCPADVQLQQEFRLADFFGKWYQAY 242
           IPL H  SF + ++ +   F A    V   +    + PA V+LQ+E   A      Y AY
Sbjct: 344 IPLQHLVSFGLNLVSRAFEFQADAFAVKLGYAKDLR-PALVKLQEENLSAMNTDPLYSAY 402

Query: 243 HYS 251
           HYS
Sbjct: 403 HYS 405


>At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 275

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 174 PADVQLQQEFRLADFFGKWY--QAYHYSSDEQQQNNCSVLELQTKPSGIYLNQSRIDRGL 347
           P+ +      +L  FF  +Y     H S + + QN C +L L       +++ S +  GL
Sbjct: 187 PSSILSVSSLKLLPFFFFFYFLSQLHLSCNTKPQN-CLILILACPAPSCWISSSMLYHGL 245

Query: 348 FHRYSIA 368
            H+YS A
Sbjct: 246 GHQYSTA 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,196
Number of Sequences: 28952
Number of extensions: 301646
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)