Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K08
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 513 STVSFS*TFDSISSKQNCVFSASFLT 590
           ST+ +  T+DSI ++ + +F   F+T
Sbjct: 161 STIDY--TYDSIEARDSAIFDGDFIT 184


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 246  RSRXTSKPXTXRNGSKDYGL 305
            RS   S+P T  N S DY +
Sbjct: 1902 RSSLWSRPSTQNNPSSDYSI 1921


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 246  RSRXTSKPXTXRNGSKDYGL 305
            RS   S+P T  N S DY +
Sbjct: 1898 RSSLWSRPSTQNNPSSDYSI 1917


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,464
Number of Sequences: 438
Number of extensions: 1932
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)