Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K06
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.5  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.5  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.5  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   9.9  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   9.9  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   9.9  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   9.9  

>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 468 VLSCVIXLILWITVLPPLSELIPLAA 391
           +LS V+ L+L   +LPP S  IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 468 VLSCVIXLILWITVLPPLSELIPLAA 391
           +LS V+ L+L   +LPP S  IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 468 VLSCVIXLILWITVLPPLSELIPLAA 391
           +LS V+ L+L   +LPP S  IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 479  KASKRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPTDYKDTRRFP 628
            + S +P   +R   + + IG +   E+H+  ++ ++W+N  D    RR P
Sbjct: 2500 RKSAKPSITERNSEF-YKIGGSHEEENHRKEKNQKKWKNREDTFRRRRKP 2548


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 419 GGNTVIHRIRXITQERTCEQKASKRPGTVK 508
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,529,637
Number of Sequences: 27780
Number of extensions: 375702
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)