Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_K06
(867 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.3
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.3
At3g19830.1 68416.m02512 C2 domain-containing protein low simila... 29 5.3
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z... 29 5.3
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 28 7.0
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 28 7.0
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 7.0
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 28 7.0
At5g20380.1 68418.m02424 transporter-related low similarity to v... 28 9.3
At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase famil... 28 9.3
At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase famil... 28 9.3
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 28 9.3
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 349 PLPRSLTRCARSFGCGERYQLTQRR 423
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 349 PLPRSLTRCARSFGCGERYQLTQRR 423
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g19830.1 68416.m02512 C2 domain-containing protein low
similarity to GLUT4 vesicle protein [Rattus norvegicus]
GI:4193489; contains Pfam profile PF00168: C2 domain
Length = 666
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 488 KRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQR 586
K+P V+R +FS+G PL + RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270
>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 262
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 756 PTPN*DTYSVSYEKAPRFXKGERRTVSGKRQGRNRRAHEGASRGKRLV 613
P P+ DT +S APR + T GK + R + + AS G +V
Sbjct: 51 PDPDLDTNPISISHAPRSYARPQTTSPGKARYRECQKNHAASSGGHVV 98
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
protein similar to meiotic asynaptic mutant 1
[Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
oleracea var. alboglabra] GI:23506946; contains Pfam
profile PF02301: HORMA domain
Length = 1399
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 555 SITKIDAQVRGGETRRTIKIPGVS--PWKLPRALSCSDPXAYRILSAFLPSGSVALSHSS 728
S+ ++ A G+ T IPG + PW PR C +R + P S+ +S +
Sbjct: 721 SVAEVFALCGSGDRPLTCMIPGENERPWNPPRGYVCMYEAYFRQCHLWFPIPSLIISFLN 780
Query: 729 R 731
R
Sbjct: 781 R 781
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 555 SITKIDAQVRGGETRRTIKIPGVS--PWKLPRALSCSDPXAYRILSAFLPSGSVALSHSS 728
S+ ++ A G+ T IPG + PW PR C +R + P S+ +S +
Sbjct: 130 SVAEVFALCGSGDRPLTYMIPGENKRPWNPPRGYVCMYEAYFRQCHLWFPIPSLIISFLN 189
Query: 729 R 731
R
Sbjct: 190 R 190
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 340 PIRKPPLPARWPIH*CRKNLPHL 272
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -1
Query: 462 SCVIXLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 289
S I + L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAE 312
Query: 288 KTSHTSTLNLKHKM 247
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 513 GLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAER 382
G +T L + S LS + W+++LPPL+ ++ + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375
>At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 390
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 605 SPSGFATSDLSVDFCDARXGGRSLWKNASNAAFLRF 498
SPS F TS L AR G++LW + F F
Sbjct: 39 SPSDFQTSILGKTIISARRKGKNLWLELDSPPFPSF 74
>At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 274
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 605 SPSGFATSDLSVDFCDARXGGRSLWKNASNAAFLRF 498
SPS F TS L AR G++LW + F F
Sbjct: 39 SPSDFQTSILGKTIISARRKGKNLWLELDSPPFPSF 74
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 488 KRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPTDYKDTRRF 625
K+P V+R +FS+G PL + R++S+R N Y+ R+
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR-ANDLQYQIGLRY 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,751
Number of Sequences: 28952
Number of extensions: 362967
Number of successful extensions: 939
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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