Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_K05
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 183 2e-46
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 171 6e-43
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 89 4e-18
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 89 4e-18
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 1e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.038
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 28 7.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 183 bits (445), Expect = 2e-46
Identities = 84/171 (49%), Positives = 113/171 (66%)
Frame = +2
Query: 371 KCPLRINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 550
K P INQF LD +A+ FK+L+KYRPE+ RPN
Sbjct: 76 KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPN 135
Query: 551 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 730
T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V
Sbjct: 136 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVV 195
Query: 731 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGXK 883
RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ K
Sbjct: 196 RRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAK 246
Score = 89.0 bits (211), Expect = 4e-18
Identities = 37/50 (74%), Positives = 45/50 (90%)
Frame = +1
Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPP 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPP 79
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 171 bits (416), Expect = 6e-43
Identities = 84/171 (49%), Positives = 113/171 (66%)
Frame = +2
Query: 371 KCPLRINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 550
K P INQF LD +A+ FK+L+KYRPE+ RPN
Sbjct: 76 KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------------RPN 115
Query: 551 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 730
T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V
Sbjct: 116 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVV 175
Query: 731 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGXK 883
RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ K
Sbjct: 176 RRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAK 226
Score = 89.0 bits (211), Expect = 4e-18
Identities = 37/50 (74%), Positives = 45/50 (90%)
Frame = +1
Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPP 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPP 79
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 89.0 bits (211), Expect = 4e-18
Identities = 37/50 (74%), Positives = 45/50 (90%)
Frame = +1
Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPP 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPP 182
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 89.0 bits (211), Expect = 4e-18
Identities = 37/50 (74%), Positives = 45/50 (90%)
Frame = +1
Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPP 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPP 182
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 371 KCPLRINQFTQTLDKTTAKGLFKILEKYRPET 466
K P INQF LD +A+ FK+L+KYRPE+
Sbjct: 179 KVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 1e-07
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 554 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 727
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 728 VHRKTCTCLALTNVESGDRASFSKVVEAIK 817
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = +2
Query: 551 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 730
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 731 HRKTCTCLALTNVESGDRASFSKVVEAIK 817
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.038
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 508 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 389
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 45 LFVSAIFAESLVYDLGHVSFRGL 113
LF+ ++++ +VYD+ HV F GL
Sbjct: 719 LFIWSVYSPKVVYDMAHVIFFGL 741
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 4 VXITTHYREFLRFCFLFRPFSPKVWYTI*VTYLFVA 111
V + T ++ + FLF PFS VW + +T L VA
Sbjct: 40 VYLITDPQKSVDVVFLFHPFSTTVWLLLSLTVLVVA 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,021
Number of Sequences: 27780
Number of extensions: 333264
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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