Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_K05
(883 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 200 8e-52
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 197 9e-51
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 1e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 5e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 2e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.036
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.036
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.063
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.063
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.063
At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 5.4
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 5.4
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 5.4
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 200 bits (489), Expect = 8e-52
Identities = 97/171 (56%), Positives = 119/171 (69%)
Frame = +2
Query: 371 KCPLRINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 550
K P +NQFT+TLDK A LFK+L KYRPE +P
Sbjct: 67 KVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPI 125
Query: 551 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 730
++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+V
Sbjct: 126 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVV 185
Query: 731 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGXK 883
H+KT +CL LT V++ D+ FSK++EAIK NFN++YEE RK WGGG++G K
Sbjct: 186 HQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSK 236
Score = 80.2 bits (189), Expect = 2e-15
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +1
Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPP 381
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPP 70
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 197 bits (480), Expect = 9e-51
Identities = 97/171 (56%), Positives = 117/171 (68%)
Frame = +2
Query: 371 KCPLRINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 550
K P +NQFT+TLDK A LFKIL KYRPE +P
Sbjct: 66 KVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPI 124
Query: 551 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 730
++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+V
Sbjct: 125 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVV 184
Query: 731 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGXK 883
H+KT L LT V++ D+ FSK++EAIK NFN++YEE RK WGGG++G K
Sbjct: 185 HQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSK 235
Score = 80.2 bits (189), Expect = 2e-15
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +1
Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPP 381
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPP 69
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = +2
Query: 554 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 733
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 734 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 853
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 554 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 727
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 728 VHRKTCTCLALTNVESGDRASFSKVVEAIK 817
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 554 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 727
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 728 VHRKTCTCLALTNVESGDRASFSKVVEAIK 817
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 554 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 727
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 728 VHRKTCTCLALTNVESGDRASFSKVVEAIK 817
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 572 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 745
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 746 TCLALTNVESGDRASFSKVVEAIK 817
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 563 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 721
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 563 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 721
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 563 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 721
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 563 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 721
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 563 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 721
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 307 FVRWPKYIRIQRQKAVLQRRLKVPPPXQPIYPDTGQDYS 423
FVRW + R +R + L L + P QP+ P T +S
Sbjct: 446 FVRWRRRWRARRLEQQLNHALTLSQPPQPLDPTTSLHHS 484
>At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 494
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 307 FVRWPKYIRIQRQKAVLQRRLKVPPPXQPIYPDTGQDYS 423
FVRW + R +R + L L + P QP+ P T +S
Sbjct: 453 FVRWRRRWRARRLEQQLNHALTLSQPPQPLDPTTSLHHS 491
>At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 307 FVRWPKYIRIQRQKAVLQRRLKVPPPXQPIYPDTGQDYS 423
FVRW + R +R + L L + P QP+ P T +S
Sbjct: 446 FVRWRRRWRARRLEQQLNHALTLSQPPQPLDPTTSLHHS 484
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 559 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 401
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 697 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 861
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 234 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 350
S+L + + LC H ++G V+ K + +Y H PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,132
Number of Sequences: 28952
Number of extensions: 321685
Number of successful extensions: 989
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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