Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_K03
         (902 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 38   0.008
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.015
SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.059
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 35   0.078
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 34   0.18 
SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)                  33   0.42 
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 32   0.73 
SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)                  30   2.9  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        30   2.9  
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          29   6.8  
SB_36082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   28   9.0  
SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 109 MPKVVYHYFACKALGEXGRMLLAYGGQDFEDHRVLSADWPDFK 237
           MP    +YF  +   E  R++ A  G +FED+R+   +WP  K
Sbjct: 1   MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVK 43



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 251 FGQMPVLVIDGK-QYAQSTAICRYLGRK 331
           FGQ+P+LVID K + AQS AI  ++ R+
Sbjct: 50  FGQVPLLVIDDKIKLAQSLAIMTFIARE 77


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = +3

Query: 498 LKKLNSIVEAN---KGHIAAGKLTWGDFVFTSMFD-YLKT-MLQIPDLEVQYPAFKKVLQ 662
           ++ +N +++ N   KG++   K+T+ D  F   F+ Y+    L +P+   +YP    +  
Sbjct: 186 MENINKLLQENNGGKGYLVGDKITYADIDFFCFFNGYINGGKLDVPEQFSKYPLLADLYN 245

Query: 663 SVLTQPKVKAFLDLGRPYEFEF*Y 734
            V+ +PK+  +L   +P   ++ Y
Sbjct: 246 RVMNKPKILEYLKHRKPNRGQYPY 269


>SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 257 QMPVLVIDGKQY---AQSTAICRYLGRKYGLAGANDEEAFEID 376
           Q+P  +   K++    QS AI RY+GRKY + G  +EE   +D
Sbjct: 3   QLPYYIDGDKKHIKITQSNAILRYIGRKYDMCGKTEEEKVIVD 45


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 35.1 bits (77), Expect = 0.078
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +3

Query: 450 KQKNTRTFRKTYTLXMLKKLNSIVEANKG---HIAAGKLTWGDFVFTSMFD-YLKT-MLQ 614
           K++ ++ F +      L+ +N + + NKG   ++   K+T+ D  F   F+ ++ +  L 
Sbjct: 96  KEQKSKEFHEETLPKRLEFINKLFQENKGGKGYLVGDKITYADIDFFCFFNGFINSGKLD 155

Query: 615 IPDLEVQYPAFKKVLQSVLTQPKVKAFLDLGRP 713
           +P+   +YP    +   V+ + K+  +L   +P
Sbjct: 156 VPEQLSKYPLLVDLYNRVMNEKKILEYLKQRKP 188



 Score = 32.7 bits (71), Expect = 0.42
 Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = +2

Query: 227 LTSSQRPRFGQMPVLVI-DGKQYAQSTAICRYLGRKY 334
           + +S R  FG++P+L I DG++ AQS AI R+L +++
Sbjct: 43  MKTSGRCPFGELPLLEISDGRKLAQSHAIFRFLAKEH 79


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +2

Query: 245 PRFGQMPVLVIDGK-QYAQSTAICRYLGRK 331
           P FGQ+P+LVID K + AQS AI  Y+ R+
Sbjct: 71  PPFGQVPLLVIDDKIKLAQSMAILAYVARE 100



 Score = 32.7 bits (71), Expect = 0.42
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 KMPKVVYHYFACKALGEXGRMLLAYGGQDFEDHRVLS-ADWPDFKPK 243
           KMP    HYF  +   E  R+  A  G ++ED R     +W   KP+
Sbjct: 22  KMPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPE 68


>SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)
          Length = 428

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 98  TN*KCLRLCTITSLARLSGXAAVCCSPTEARTSKTTACSLLTGLTSSQRPRFGQMP 265
           T  +C  L TI  L++ +            R ++  AC LLT L + +RP  G+MP
Sbjct: 221 TRRQCRHLTTIVQLSKPAKEILRDLGCRRGRGAEPAACRLLTRLRNEERPPVGRMP 276


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 221 TGLTSSQRPRFGQMPVLVIDGKQYAQSTAICRYLGRKYGL 340
           T + +  +   G +PVL +DG QY +S AI R   +  GL
Sbjct: 40  TKMKAENKTIMGYLPVLEVDGIQYCESMAIFRLAAKLAGL 79



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 109 MPKVVYHYFACKALGEXGRMLLAYGGQDFEDHRVLSADWPDFK 237
           MP     YF  +   E  R+  A GG  +ED R+   +W   K
Sbjct: 1   MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMK 43


>SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)
          Length = 280

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 139 CKALGEXGRMLLAYGGQDFEDHR 207
           C+ LG+  R+LL Y  +DFED R
Sbjct: 194 CQKLGQPIRLLLKYTNEDFEDKR 216


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -1

Query: 662  LQDFLESRILHFQIRYLKHGLQVVKHAGEHEITPCQLSGSNVTFVRFNYRVQLLQHXQGI 483
            ++  ++  +L+F  R   +GL V +  G+H +T  Q+ G+ +  V    +  ++    G 
Sbjct: 1176 MRSLVQEMVLNFSKRLSTYGLTVSELTGDHNLTKEQIHGTQI-IVCTPEKWDIITRKSGE 1234

Query: 482  R-FSKSPRVFLLLTPHQLRSIQRPL 411
            R F++  R+ ++   H L   + P+
Sbjct: 1235 RTFTQLVRLIIIDEIHLLHDDRGPV 1259


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 543 AAGKLTWGDFVFTSMFDYLKTMLQIPDLEVQYPAFKKVLQSVLT 674
           A G++ WGDFV   +  +  TML   D E Q  A  K L+ + T
Sbjct: 349 AHGRM-WGDFVSKKLVPHFYTMLLKQDKEDQEEAKTKYLEGLRT 391


>SB_36082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 392 LHDIRAKAAAVYYEA--DEELKAKKHEDFSKNVYP 490
           LHD+R +AAAV   A   EE      E+F+K+ +P
Sbjct: 15  LHDVRDRAAAVLERAKTGEERADDSEEEFAKSFHP 49


>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 115 KVVYHYFACKALGEXGRMLLAYGGQDFEDHRVLSADWPDFKPK 243
           +V  HYF  +   E  R+++   G  + +      DWP  K K
Sbjct: 53  QVTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 460 FFCF*LLISFVVYSGRFGANIVQELHVLVDLEGLLVIGPGE 338
           +FC   L  FV+   RF    +Q+ +  + L+   VI PGE
Sbjct: 842 YFCSGSLYRFVLLLFRFSVQKLQDAYTQLALQAAKVISPGE 882


>SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +3

Query: 567 DFVFTSMFDYLKTMLQIPDLE-----VQYPAFKKVLQSVLTQPKVKAFLD 701
           ++ FT++F Y++T+L+I  +      VQ+P     ++    Q + KA LD
Sbjct: 201 EYEFTTIFGYIETLLEIHSVTYLHVVVQFPRLSCYVKYCANQFEAKAMLD 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,637,546
Number of Sequences: 59808
Number of extensions: 358637
Number of successful extensions: 988
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)