Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J23
         (894 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    26   1.8  
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     25   4.1  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   7.2  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 474 SHVLSCVIPLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 269 SILLSLVVFLLLVSKILPPTSLVLPLIA 296


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 739 VSQFGCRSFAPXWAVCTNPPFXPXXXPYP 825
           V  FG R   P W+V   PPF P   P P
Sbjct: 73  VGIFG-RPGRPWWSVPGIPPFRPPWHPRP 100


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 505 YGSWPFAGLLLTCSFLRYPPDSVDN 431
           +GSW + G ++    L+  PDS DN
Sbjct: 166 FGSWTYDGYMVDLRHLQQTPDS-DN 189


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,990
Number of Sequences: 2352
Number of extensions: 14344
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)