Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J23
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.2  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.2  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.2  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   4.3  
D88812-1|BAB46921.1|  729|Homo sapiens cerebral protein-6 protein.     31   7.5  
D87462-1|BAA13401.2|  759|Homo sapiens KIAA0272 protein.               31   7.5  
BC001596-1|AAH01596.1|  729|Homo sapiens BRCA1 associated protei...    31   7.5  
AY130008-1|AAN05092.1|  566|Homo sapiens MU-MB-17.261 protein.         31   7.5  
AF045581-1|AAC15970.1|  729|Homo sapiens BRCA1 associated protei...    31   7.5  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 697 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 569
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 697 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 569
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 697 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 569
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 641 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 727
           + R PV T+P+   L AF   GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189


>D88812-1|BAB46921.1|  729|Homo sapiens cerebral protein-6 protein.
          Length = 729

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626 PPGSSLVR-SPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSGVGRS 766
           PPGSSL    P PT P+   L AFL + + A S       L++GVGRS
Sbjct: 338 PPGSSLNGVHPNPT-PIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRS 384


>D87462-1|BAA13401.2|  759|Homo sapiens KIAA0272 protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626 PPGSSLVR-SPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSGVGRS 766
           PPGSSL    P PT P+   L AFL + + A S       L++GVGRS
Sbjct: 368 PPGSSLNGVHPNPT-PIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRS 414


>BC001596-1|AAH01596.1|  729|Homo sapiens BRCA1 associated protein-1
           (ubiquitin carboxy-terminal hydrolase) protein.
          Length = 729

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626 PPGSSLVR-SPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSGVGRS 766
           PPGSSL    P PT P+   L AFL + + A S       L++GVGRS
Sbjct: 338 PPGSSLNGVHPNPT-PIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRS 384


>AY130008-1|AAN05092.1|  566|Homo sapiens MU-MB-17.261 protein.
          Length = 566

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626 PPGSSLVR-SPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSGVGRS 766
           PPGSSL    P PT P+   L AFL + + A S       L++GVGRS
Sbjct: 175 PPGSSLNGVHPNPT-PIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRS 221


>AF045581-1|AAC15970.1|  729|Homo sapiens BRCA1 associated protein 1
           protein.
          Length = 729

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626 PPGSSLVR-SPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSGVGRS 766
           PPGSSL    P PT P+   L AFL + + A S       L++GVGRS
Sbjct: 338 PPGSSLNGVHPNPT-PIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRS 384


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,300,292
Number of Sequences: 237096
Number of extensions: 2413328
Number of successful extensions: 11062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11061
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)