Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_J23
(894 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 31 1.0
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 3.1
At3g19970.1 68416.m02527 expressed protein 29 4.2
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 4.2
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to... 29 4.2
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.5
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.5
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 29 5.5
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 29 5.5
At3g28890.1 68416.m03606 leucine-rich repeat family protein cont... 29 5.5
At3g19830.1 68416.m02512 C2 domain-containing protein low simila... 29 5.5
At5g20380.1 68418.m02424 transporter-related low similarity to v... 28 9.6
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 9.6
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 462 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 289
S IP+ L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312
Query: 288 KTSHTXXLNLKHKM 247
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 641 LVRSPVPTLPLTGYLSAFLPSGSVAL 718
L+R +LP T Y +FLPS +VAL
Sbjct: 15 LLRISTASLPATNYFDSFLPSDAVAL 40
>At3g19970.1 68416.m02527 expressed protein
Length = 434
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 635 SSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSGVGRS 766
S+ V + PT+ +G+ +AFL SVA S+ Y S+G+ S
Sbjct: 272 SAPVAAADPTVWASGFSAAFLKKSSVATKGSASSSYESNGINIS 315
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 727 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 623
A R RH+ R +GG+ S R R R + GA RG+
Sbjct: 575 APRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608
>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 356
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 528 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 391
+R++R FT +LLA S +L VIP IL IT L S AA
Sbjct: 54 QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 349 PLPRSLTRCARSFGCGERYQLTQRR 423
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 349 PLPRSLTRCARSFGCGERYQLTQRR 423
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 495 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 397
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 495 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 397
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g28890.1 68416.m03606 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 711
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 761 RSLXAG---LCARTPRSXRXXXLIRXYRLESNRVXTTYRHW 874
RSL G L + PRS R + +ESNR+ T+ W
Sbjct: 386 RSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRINDTFPFW 426
>At3g19830.1 68416.m02512 C2 domain-containing protein low
similarity to GLUT4 vesicle protein [Rattus norvegicus]
GI:4193489; contains Pfam profile PF00168: C2 domain
Length = 666
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 488 KRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQR 586
K+P V+R +FS+G PL + RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 513 GLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAER 382
G +T L + S LS + W+++LPPL+ ++ + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 340 PIRKPPLPARWPIH*CRKNLP 278
P PP P R P H CRKN P
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDP 404
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,239
Number of Sequences: 28952
Number of extensions: 318778
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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