Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J22
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.89 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = +3

Query: 354 FXXXPGGFXXGXXXFXGGGGGFXPXXGGGXGXP 452
           F   PGGF  G   F GG GGF    GG  G P
Sbjct: 226 FGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = +3

Query: 354 FXXXPGGFXXGXXXFXGGGGGFXPXXGGGXGXP 452
           F   PGGF  G   F GG GGF    GG  G P
Sbjct: 233 FEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265



 Score = 33.1 bits (72), Expect = 0.055
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +3

Query: 354 FXXXPGGFXXGXXXFXGGGGGFXPXXGGGXG 446
           F   PGGF  G   F GG GGF    GG  G
Sbjct: 240 FGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 369 GGFXXGXXXFXGGGGGFXPXXGGGXG 446
           GGF  G   F GG GGF    GG  G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGG 249



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +3

Query: 285 GXFFXGPXFXXXXXGXXXXXXXKFXXXPGGFXXGXXXFXGGGGG 416
           G F  GP       G        F    GGF  G   F GG GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -2

Query: 454 GGXPXPPPXXGXXPPPPPXKXXXPXXXPPGXS 359
           G  P PP      PPPPP         PP  S
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS 380


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 445 PXPPPXXGXXPPPPPXKXXXPXXXPP 368
           P P P  G  PPPPP         PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = -2

Query: 454 GGXPXPPP---XXGXXPPPPP 401
           GG P PPP     G  PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 439  PPPXXGXXPPPPPXKXXXPXXXPP 368
            PP      PPPPP     P   PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 445  PXPPPXXGXXPPPP--PXKXXXPXXXPP 368
            P PPP     PPPP  P     P   PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 454 GGXPXPPPXXGXXPPPPPXKXXXPXXXPPG 365
           G  P PPP  G  PP  P     P   PPG
Sbjct: 7   GNPPPPPPPPGFEPPSQP-----PPPPPPG 31


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 445 PXPPPXXGXXPPPPPXKXXXPXXXPP 368
           P P P     PPPPP +       PP
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPP 759


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 369 GGFXXGXXXFXGGGGGFXPXXGGGXG 446
           GG   G   F GG GGF    GG  G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARG 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,792
Number of Sequences: 5004
Number of extensions: 17908
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)