Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J20
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.23 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    26   0.54 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   5.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -3

Query: 485 GLHRGPSQRAQHPLCSVPWPSCCRRRTVRKRSCPDGRSVRKVPSGQSPWCRAPSRXRMAR 306
           G+H    Q+AQ     V  P      + ++++ P G +   +PS   PW R+    +  R
Sbjct: 220 GMHPRQQQQAQQHQGVVTSPL-----SQQQQAAPQGAASANLPSPLYPWMRSQFERKRGR 274

Query: 305 GTY 297
            TY
Sbjct: 275 QTY 277



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 608 QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 742
           Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 461 VDSVLDVVRKESESCDCLQGLPT 529
           +DS+++++R   ++CD L G+ T
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDT 128


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 708 FQLAGELRESHCM 670
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,668
Number of Sequences: 438
Number of extensions: 4530
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)