Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J19
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   8.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   8.9  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 160  EPXGDDVECSETTAEKCSEEQPRGESQXGHADAVQXXRKV*RKARVGEA 14
            +P  ++ E SE  +E  SEE    ES+    ++ +   ++ RKAR  +A
Sbjct: 956  DPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERKARQEDA 1004


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 515 HIWLSLSSFQSFHLNSKFPVGSFFPICKTKV*GLSFAGFG 396
           HIWL +     F+ NSK    +F P     V G S   FG
Sbjct: 241 HIWL-IKERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFG 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,096
Number of Sequences: 5004
Number of extensions: 37197
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)