Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J19
         (946 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1270 - 28867654-28868076,28868394-28868785,28869438-288695...    29   4.1  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   7.1  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    29   7.1  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    28   9.4  

>06_03_1270 -
           28867654-28868076,28868394-28868785,28869438-28869588,
           28869727-28869906
          Length = 381

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -3

Query: 518 QHIWLSLSSFQSFHLNSKFPVGSFFPICKTKV*GLSFAGFGGT*RESASVSIVES 354
           Q  WL  +S Q    N   P  +FF I   +V GL + GF G  +E  + S V S
Sbjct: 229 QLAWLRATS-QELQQNLHAPAFAFFHIPIPEVRGLWYTGFKGQYQEGVACSTVNS 282


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 348  FDALYNADACTLTSCPTEAGKTQTLDFS 431
            F  LYN D   L + PT +GKT   +F+
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEFA 1397


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 131 RDHSREMQRRTAKRREPGWTR*RSAXVTQSMKEGPSRR 18
           R HSR   R  ++ R   +TR R A  ++S   G SRR
Sbjct: 615 RRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRR 652


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 348  FDALYNADACTLTSCPTEAGKTQTLDFS 431
            F A YN+D   L + PT +GKT   +F+
Sbjct: 1339 FTASYNSDDSVLVAAPTGSGKTICAEFA 1366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,320
Number of Sequences: 37544
Number of extensions: 254071
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)