Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J19
         (946 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        34   0.19 
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 204 ELXPVLTVXCATSKKGKTRRFLSTLHHNSPQLSSXXGLFGLKXGAEIPFDALYNADACTL 383
           +L P     C T  KG      +T   N    S+   +FG+  G ++PF  L N + C  
Sbjct: 39  DLEPCEEEPC-TFHKGSNETCKATFVPNELVSSATIEVFGIIGGVQVPF-PLKNPNVCEN 96

Query: 384 --TSCPTEAGKTQTLDFS 431
               CP  AG + TLD +
Sbjct: 97  HGVKCPINAGDSATLDLN 114


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 568 IQSVSSFTKQASHLFCSSTSGSH 500
           +Q+VS+  K  SHLF SS  G+H
Sbjct: 559 VQAVSTANKYISHLFSSSLFGTH 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,082
Number of Sequences: 59808
Number of extensions: 302595
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)