Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J19
         (946 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45380.1 68416.m04899 hypothetical protein contains Pfam prof...    30   1.9  
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof...    28   7.8  

>At3g45380.1 68416.m04899 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 690

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 292 GELWCKVERNL--RVXPFFEVAQXTVNTGXNSDRVHRTRAGXHXPTEPXGDDVECSETTA 119
           G ++   E++L   V    +V     N G  +D V    AG   PTEP   DV  ++TT 
Sbjct: 10  GPVYDSTEKSLSGEVSTSEQVTSEIENDGDAADLVPTEPAG---PTEPAARDVAANDTTK 66

Query: 118 EKCSEEQPRGESQXG 74
           E    E+   E + G
Sbjct: 67  ESAEIEKAMEEPRDG 81


>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 301

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 333 GAEIPFDALYNADACTLTSCPTE 401
           G EI F+ +YN D  T T  PTE
Sbjct: 241 GREIRFEEVYNEDVQTRTKAPTE 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,990
Number of Sequences: 28952
Number of extensions: 203722
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)