Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J18
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   1.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   5.0  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 606 GRQDPRECPARRRKILCLHS 665
           G  +P+ECP  RR   C +S
Sbjct: 1   GINEPQECPYCRRNFSCYYS 20


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 103 LPAQVCLGVFSML-LNSQNNVKS*XFPIVS 17
           +PA+V LGV S+L L +QN       P VS
Sbjct: 242 IPARVTLGVTSLLTLATQNTQSQQSLPPVS 271


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 100 PAQVCLGVFSMLLNSQNNVKS 38
           PA+V LGV S+L  S  + KS
Sbjct: 274 PARVTLGVTSLLTLSTQHAKS 294


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 26  REXLRFDIILRVQQHRKY 79
           +E L+FD++++V   R+Y
Sbjct: 125 KEGLQFDVLVKVDMTRQY 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,962
Number of Sequences: 438
Number of extensions: 5533
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)