Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J16
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    42   8e-05
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   7.8  

>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 22/51 (43%), Positives = 33/51 (64%)
 Frame = +1

Query: 544 WTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEXIKGXPDLYGPIWI 696
           WTI+     F+V+T +VV+R I +++P   + N+FD  +   PDLYGP WI
Sbjct: 50  WTIK---DSFNVETKDVVQRCIHTLIP---TVNFFD-VVDDRPDLYGPFWI 93


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 291 NEIKQILEKFTVQYWLVKMLTSYIKFQVIAKV 196
           +E+K  LEK ++ + L K L ++I+  + A+V
Sbjct: 127 SEVKDKLEKLSIHHPLKKDLLAFIQLDIAAEV 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,074
Number of Sequences: 5004
Number of extensions: 61642
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)