Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J16
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27490.1 68418.m03286 integral membrane Yip1 family protein c...    54   9e-08
At3g05280.1 68416.m00576 integral membrane Yip1 family protein c...    52   5e-07
At2g39805.1 68415.m04889 integral membrane Yip1 family protein c...    49   5e-06
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    33   0.32 
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    28   9.0  

>At5g27490.1 68418.m03286 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 282

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
 Frame = +1

Query: 520 QPQSN---HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEXIKGXPDLYGPI 690
           +PQS+   H F T+  Y+ YFDV TS+VVER+  S+ P    R  F E     PDLYGP 
Sbjct: 74  EPQSSGWLHRF-TVGAYKPYFDVDTSDVVERLKESLFP---FRGTFTEKTANNPDLYGPF 129

Query: 691 WI 696
           WI
Sbjct: 130 WI 131



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 702 TLIFTIAVSGNIASYLQNVNKAVHWRYDFHLVSYAA 809
           TLIF  A  G   +Y+ +  K   W YD +LV+++A
Sbjct: 134 TLIFVAASIGTFVTYIAHKLKKQEWNYDINLVTWSA 169


>At3g05280.1 68416.m00576 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +1

Query: 520 QPQSN---HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEXIKGXPDLYGPI 690
           +PQS    H F T+  Y+ +FDV TS+VVER+  S+ P    R  F E     PDLYGP 
Sbjct: 73  EPQSGGWLHKF-TVGAYKPFFDVDTSDVVERLKESLFP---FRGTFTEKTADKPDLYGPF 128

Query: 691 WI 696
           WI
Sbjct: 129 WI 130



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 702 TLIFTIAVSGNIASYLQNVNKAVHWRYDFHLVSYAA 809
           TLIF  A  G   +Y+ +  K   W YD +LV+++A
Sbjct: 133 TLIFVAASIGTFVTYIAHKWKKQEWNYDINLVTWSA 168


>At2g39805.1 68415.m04889 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 275

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = +1

Query: 520 QPQSN-HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEXIKGXPDLYGPIWI 696
           QP +N   F+ +  Y +YFDV T  V+ R++SS+ P   S ++F++ I   PDLYG +WI
Sbjct: 70  QPSNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYP--TSGDFFNK-IDANPDLYGLVWI 126



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 702 TLIFTIAVSGNIASYL--QNVNKAVHWRYDFHLVSYAAXAI 818
           TL+F +A  GN A+YL  +  +    W +D + ++ AA  I
Sbjct: 129 TLVFVLASLGNCATYLVKKRTDSNAPWIFDVNYMNLAASII 169


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 203 AITWNLMYDVNILTSQYCTVNFSKICLISFF 295
           ++ W  M+ VNIL++     NF K+CL +++
Sbjct: 261 SVKWEKMFSVNILSTNCLDANFWKLCLAAYY 291


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 248 GLSKC*RRTLNSKLLQKYKNRYCFRPRNETL 156
           GLS+  +RT N+KLL    NR C  P  E L
Sbjct: 63  GLSETEKRTNNTKLLLTLLNRNCESPFRECL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,893
Number of Sequences: 28952
Number of extensions: 298960
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)