Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J14
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   3.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 545 PXXPPXXXXFXXXXKXPPXPPPPXXKKNPIXXP 447
           P  PP    F    + PP PPP   KK     P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 546 PXXPPLXPXFXXXXKKXPPPXPPPXXKKPN 457
           P  PP  P F    +  PPP P    K+ N
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKN 38


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect(2) = 3.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 669  PLSXXKTPXPPPFXXSPPP 613
            P     TP PPP    PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPP 1718



 Score = 20.6 bits (41), Expect(2) = 3.7
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 495  PPPXPPPXXKKPNTXXXSPL 436
            PPP  PP    P +    PL
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPL 1735


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 3.7
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -3

Query: 546 PXXPPLXPXFXXXXKKXPPPXPP 478
           P  PP  P         PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = -3

Query: 537 PPLXPXFXXXXKKXPPPXPPPXXKKPNTXXXSP 439
           PP  P         PPP PPP      +   +P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 22.2 bits (45), Expect(2) = 3.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 648 PXPPPFXXSPPPP 610
           P P P    PPPP
Sbjct: 752 PPPAPIMGGPPPP 764



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -3

Query: 669 PLSXXKTPXPPPFXXSPPPP 610
           P     TP P P    PP P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAP 756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,302
Number of Sequences: 5004
Number of extensions: 12557
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)