Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_J14
(974 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 37 0.022
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 0.45
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.66
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.78
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 27 0.82
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 27 0.86
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 26 1.4
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 24 2.7
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 24 3.0
SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 3.1
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 24 4.0
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 5.7
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 24 6.3
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 37.1 bits (82), Expect = 0.022
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = -3
Query: 666 LSXXKTPXPPPFXXSPPPPXXXXTXSFFFLXQK*XX*XXXPXXPPLXPXFXXXXKKXPPP 487
+S P PPP SPPPP S Q P PP P PPP
Sbjct: 363 MSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Query: 486 XPPPXXKKP 460
PPP P
Sbjct: 423 PPPPPPPPP 431
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -1
Query: 545 PXXPPXXXXFXXXXKXPPXPPPPXXKKNPIXXPXLXFFSPI 423
P PP PP PPPP + P L F SP+
Sbjct: 409 PPPPPPPPPPAPPPPPPPPPPPPPALRLACAPPRLRFTSPV 449
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 26.2 bits (55), Expect(2) = 0.45
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 495 PPPXPPPXXKKPNTXXXSP 439
PPP PPP +P+T P
Sbjct: 692 PPPPPPPPPPQPSTPPPPP 710
Score = 25.0 bits (52), Expect(2) = 0.45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 669 PLSXXKTPXPPPFXXSPPPP 610
P+ P PPP PPPP
Sbjct: 677 PIQTMVPPPPPPPPPPPPPP 696
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 26.6 bits (56), Expect(2) = 0.66
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 495 PPPXPPPXXKKP 460
PPP PPP KKP
Sbjct: 242 PPPPPPPPVKKP 253
Score = 24.2 bits (50), Expect(2) = 0.66
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP PPPP
Sbjct: 233 PPPPPAAAPPPPP 245
>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.5 bits (58), Expect(2) = 0.78
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 651 TPXPPPFXXSPPPP 610
TP PPP SPPPP
Sbjct: 460 TPIPPPPPMSPPPP 473
Score = 23.0 bits (47), Expect(2) = 0.78
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3
Query: 495 PPPXPPPXXKKPNT 454
PPP PPP P T
Sbjct: 471 PPPTPPPPATSPVT 484
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 27.1 bits (57), Expect(2) = 0.82
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 495 PPPXPPPXXKKPN 457
PPP PPP KKP+
Sbjct: 288 PPPPPPPGAKKPD 300
Score = 23.4 bits (48), Expect(2) = 0.82
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP PPPP
Sbjct: 282 PPPPPPPPPPPPP 294
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 27.1 bits (57), Expect(2) = 0.86
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 495 PPPXPPPXXKKPN 457
PPP PPP KKP+
Sbjct: 87 PPPPPPPGAKKPD 99
Score = 23.4 bits (48), Expect(2) = 0.86
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP PPPP
Sbjct: 81 PPPPPPPPPPPPP 93
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 25.8 bits (54), Expect(2) = 1.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -3
Query: 546 PXXPPLXPXFXXXXKKXPPPXPPPXXKKP 460
P PP P PPP PPP P
Sbjct: 468 PPPPPPPPPPPPPPPPPPPPFPPPPPPTP 496
Score = 23.8 bits (49), Expect(2) = 1.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 654 KTPXPPPFXXSPPPP 610
+ P PPP PPPP
Sbjct: 462 QAPPPPPPPPPPPPP 476
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 24.2 bits (50), Expect(2) = 2.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 654 KTPXPPPFXXSPPPP 610
++P PPP PPPP
Sbjct: 1309 ESPPPPPPPPPPPPP 1323
Score = 24.2 bits (50), Expect(2) = 2.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 495 PPPXPPPXXKKPN 457
PPP PPP PN
Sbjct: 1319 PPPPPPPLPPTPN 1331
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 24.2 bits (50), Expect(2) = 3.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP PPPP
Sbjct: 426 PPPPPAPLPPPPP 438
Score = 24.2 bits (50), Expect(2) = 3.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -3
Query: 495 PPPXPPPXXKKPNTXXXSPLFFP 427
P P PPP +P T PL P
Sbjct: 432 PLPPPPPPPPQPTTALPDPLQGP 454
>SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 495 PPPXPPPXXKKPNTXXXSPL 436
PPP PPP P++ PL
Sbjct: 60 PPPPPPPPPPPPSSSPSRPL 79
Score = 23.4 bits (48), Expect(2) = 3.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP PPPP
Sbjct: 56 PPPPPPPPPPPPP 68
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 24.2 bits (50), Expect(2) = 4.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP +PPPP
Sbjct: 305 PPPPPPGGAPPPP 317
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -3
Query: 546 PXXPPLXPXFXXXXKKXPPPXPPP 475
P PP P PPP PPP
Sbjct: 314 PPPPPPPPPPPPGDGGAPPPPPPP 337
>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 29.5 bits (63), Expect = 4.3
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Frame = -3
Query: 669 PLSXXKTPXPPPFXXSPPPPXXXXTXSFFFLXQK*XX*XXXPXX---PPLXPXFXXXXKK 499
PLS P PP PPPP + + F L PP P +
Sbjct: 713 PLSSTLGPPPPA---PPPPPLGRDSAAVFMLTWTPLTNTSSAANVPPPPPPPAVPGEGAR 769
Query: 498 XPPPXPPP 475
PPP PPP
Sbjct: 770 PPPPPPPP 777
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 666 LSXXKTPXPPPFXXSPPPP 610
LS +TP PPP +PPPP
Sbjct: 23 LSCCETPPPPPPYEAPPPP 41
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.1 bits (62), Expect = 5.7
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = -3
Query: 642 PPPFXXSPPPPXXXXTXSFFFLXQK*XX*XXXPXXPPLXPXFXXXXKKXPPPXP-PPXXK 466
PPP+ PPPP + + P PP P + PP P P
Sbjct: 96 PPPYPPYPPPPPYPPPPNPPYPPP-----PNAPYPPPPNPPYPPPPNAPYPPSPNAPYPP 150
Query: 465 KPNTXXXSPLFFP 427
PN PL+ P
Sbjct: 151 PPNPPYPPPLYPP 163
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 24.2 bits (50), Expect(2) = 6.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 648 PXPPPFXXSPPPP 610
P PPP PPPP
Sbjct: 209 PRPPPSPPPPPPP 221
Score = 23.0 bits (47), Expect(2) = 6.3
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = -3
Query: 495 PPPXPPPXXKKPNTXXXSP 439
PPP PPP P P
Sbjct: 216 PPPPPPPSPSPPRPPPPPP 234
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.3 bits (60), Expect = 10.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 546 PXXPPLXPXFXXXXKKXPPPXPPPXXKKPNT 454
P PP P PPP PPP P T
Sbjct: 1158 PPPPPPPPPPPSSPSPPPPPPPPPPPPTPTT 1188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,382
Number of Sequences: 59808
Number of extensions: 118832
Number of successful extensions: 1684
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2883962642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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