Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J11
         (902 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      30   2.9  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   30   2.9  
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)               29   5.1  
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          28   9.0  
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   9.0  
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   9.0  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = +1

Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
           S++P +   R S GSL P  +T+  TSRS  PR+ S       +    +  ST   P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRS-----RSRARTPSTPSTPSTPSTP 232

Query: 670 SNTT 681
           S  T
Sbjct: 233 STIT 236


>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 337 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 203
           W +   +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 216 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 383
           Y + I K  E+ KEK  KG+  K    R  E GKR     A     +D  E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 159 VQVWR*KPAHTRRGRRQTKSVSSWRSGYL*KQVNKQLKILRE 34
           V+V R +P H R     + S++ WRS Y  +   + L+  R+
Sbjct: 163 VEVRRAEPGHHRSQASPSLSIAGWRSAYFVRSTRRSLRPARQ 204


>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
          Length = 435

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +3

Query: 426 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST-EDKQYL 602
           +NK +H    + D  +   IA+G +  + ++ +     PV E    Y +   T ED    
Sbjct: 22  VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81

Query: 603 KLDNTKGSSDDRIIYGDSTAD 665
            +D  +   D   I+  +  D
Sbjct: 82  AIDKVRSRDDYAFIWDSAVLD 102


>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 398 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 577
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L +   +    +  L   
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617

Query: 578 VHR 586
           + +
Sbjct: 618 IEK 620


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 246 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 335
           + +E+ GE   EA KRLI+ GK+  M   Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 534 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 653
           FT + E      K MS E+KQ  K DN KG S+ +   GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243


>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 458

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
           P TK         PP  K T +  R CPP T  T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
           P TK         PP  K T +  R CPP T  T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
           P TK         PP  K T +  R CPP T  T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
           P TK         PP  K T +  R CPP T  T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211


>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 259

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
           P TK         PP  K T +  R CPP T  T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 435 RDHHALKLIDQQNHNK-IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLD 611
           R HH+   +  +   K +    SKD T+  VS +   + E  ++    M+T +K  +K+ 
Sbjct: 418 RRHHSFGGLPLEYREKRLRESSSKDNTNTSVSLEIKKIREAQKLIDAAMATSEKS-IKVG 476

Query: 612 NTKGSSDDR 638
            +KG  D +
Sbjct: 477 ESKGLWDSK 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,198,566
Number of Sequences: 59808
Number of extensions: 579688
Number of successful extensions: 1828
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)