Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J10
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    41   2e-04
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   2.0  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   7.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   7.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   7.9  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +3

Query: 675 GEITKSVFMSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRXEPCVVIGRHXN 833
           G +   V + +S + Y NLALE++LY+N   T  H ++++   P V+IGR+ N
Sbjct: 21  GLLQAKVVVCKSVNPYFNLALENYLYENS--TAKHCLLLYTNSPSVIIGRNQN 71


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +3

Query: 654 ERVLPT-EG-EITKSVFMSQSTDIYTNLALED 743
           E  +PT  G EI +S+F+SQ+  ++ N++LED
Sbjct: 718 EAAIPTFRGLEIPESLFLSQNVFVFLNVSLED 749


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 589 PANVQALLDTILFTIA 542
           PAN+QALL+ I+F IA
Sbjct: 517 PANLQALLNRIIFIIA 532


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 370 VLPHRRRCQPKRGRSGIREGQWFDATTSR 284
           V PH+RR   +R     R    F ATT R
Sbjct: 44  VTPHKRRALARRNSLARRRSNVFSATTPR 72


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 666 EALSPFLMRPLCWMPQHFLYMFS-VQDQQMCKHCWILFFSP*LEPSF 529
           E+L  F   P+    Q   Y  S V+++     CW  F    ++PSF
Sbjct: 255 ESLKSFTTHPIYSFIQERKYFLSYVENRYQSLDCWNKFLEKEIDPSF 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,583
Number of Sequences: 5004
Number of extensions: 69467
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)