Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J10
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)                       28   8.5  

>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 848 SPPAXIXMSSNNHTWLXSPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 693
           SPP+      ++H     PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 150 SPPSTSSSQRHHH----HPHHHHSAITTIHIII--TAPSSPSISSSQRNHHH 195



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 848 SPPAXIXMSSNNHTWLXSPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 693
           SPP+      ++H     PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 312 SPPSTSSSQRHHH----HPHHHHSAITTIHIII--TAPSSPSISSSQRNHHH 357



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 848 SPPAXIXMSSNNHTWLXSPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 693
           SPP+      ++H     PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 378 SPPSTSSSQRHHH----HPHHHHSAITTIHIII--TAPSSPSISSSQRHHHH 423



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 794 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 693
           PHHH+  I  +H++I     S   I++S+  H H
Sbjct: 522 PHHHHSAIITIHIII--TAPSPPSISLSQRHHHH 553



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 848 SPPAXIXMSSNNHTWLXSPHHHN--MMICEVHVLIQPILQSQVRINISRLRHEH 693
           SPP+ I +S  +H     PHHH+    I  +H++I+    S   I++S+  H H
Sbjct: 574 SPPS-ISLSQRHH---HHPHHHSHHSAIITIHIIIR--APSSPSISLSQRHHHH 621



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 848 SPPAXIXMSSNNHTWLXSPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 693
           SPP+      N+H     PHHH+  I  +H++    + S    + S+  H H
Sbjct: 22  SPPSTSSSQRNHH----HPHHHHSAITTIHII--TTVPSPTSTSSSQRYHHH 67



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 848 SPPAXIXMSSNNHTWLXSPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 693
           SPP+      ++H     PHHH+  I  +H++I    QS    + S+ RH H
Sbjct: 248 SPPSTSSSQRHHH----HPHHHHSAIITIHIII--TAQSPPSTSSSQ-RHRH 292


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 669 LEALSPFLMRPLCWMPQHFLYMFSVQDQQMCKHC 568
           L  L  + +RP+ W+ Q+F +   +Q  Q   HC
Sbjct: 240 LRFLRIWAIRPIYWLVQYFFFKTPIQGAQTTIHC 273


>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 267 NSITNSQTITAVTWHSSS 214
           +S++ S TITA+ WH SS
Sbjct: 288 HSVSQSDTITAIAWHPSS 305


>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
          Length = 442

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -2

Query: 334 GRSGIREGQWFDATTSRFGAGY*FDN 257
           GR  IRE  WF+ATTS    GY  DN
Sbjct: 340 GRRSIRECDWFNATTSN-STGY-IDN 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,518,804
Number of Sequences: 59808
Number of extensions: 532429
Number of successful extensions: 1386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)