Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J10
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    31   1.4  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    31   1.4  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   5.6  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   5.6  

>Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical
           protein C45G3.3 protein.
          Length = 289

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 690 SVFMSQSTDIYTNLALEDWLYKNMDFT-NHHVMMVWRXEPCVVIGRHXN 833
           +V  S S+ I+ NLA E+ +++  +   N  ++++W   P VVIGRH N
Sbjct: 11  TVLKSTSSCIFENLAYEEHIFRTHNVAQNGEILLMWSNRPAVVIGRHQN 59


>Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical
           protein ZK637.9b protein.
          Length = 243

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 657 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLYK 755
           +++ T  E+T S VF+  S+ +  ++ LE+W+YK
Sbjct: 206 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 239


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 657 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLYK 755
           +++ T  E+T S VF+  S+ +  ++ LE+W+YK
Sbjct: 191 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 224


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 657 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLYK 755
           +++ T  E+T S VF+  S+ +  ++ LE+W+YK
Sbjct: 191 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 224


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 673 RGRSPSQCSCLNRLIFIRTWLWRIGC-IRTW---TSQIIML*WC---GXMSHVWLLEDI 828
           RG++      L    F + WL+RIGC ++ W   T  I +  +C   G + HV +  D+
Sbjct: 60  RGKAVGNTVALTARAFFQLWLFRIGCFVQRWAWSTIFISLFLYCLCLGGLRHVTIETDL 118


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 673 RGRSPSQCSCLNRLIFIRTWLWRIGC-IRTW---TSQIIML*WC---GXMSHVWLLEDI 828
           RG++      L    F + WL+RIGC ++ W   T  I +  +C   G + HV +  D+
Sbjct: 60  RGKAVGNTVALTARAFFQLWLFRIGCFVQRWAWSTIFISLFLYCLCLGGLRHVTIETDL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,045
Number of Sequences: 27780
Number of extensions: 401313
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)