Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J09
         (1000 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W2E8 Cluster: CG10320-PA; n=7; Endopterygota|Rep: CG1...    47   9e-04
UniRef50_UPI0000586C08 Cluster: PREDICTED: similar to NADH dehyd...    45   0.004
UniRef50_Q5BQW1 Cluster: SJCHGC09788 protein; n=1; Schistosoma j...    44   0.008
UniRef50_O43676 Cluster: NADH dehydrogenase [ubiquinone] 1 beta ...    42   0.019
UniRef50_Q4SNW8 Cluster: Chromosome 15 SCAF14542, whole genome s...    40   0.13 
UniRef50_Q09JJ9 Cluster: NADH-dehydrogenase (Ubiquinone) 1 beta-...    39   0.23 
UniRef50_Q18095 Cluster: Putative uncharacterized protein; n=2; ...    34   5.0  

>UniRef50_Q9W2E8 Cluster: CG10320-PA; n=7; Endopterygota|Rep:
           CG10320-PA - Drosophila melanogaster (Fruit fly)
          Length = 110

 Score = 46.8 bits (106), Expect = 9e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +3

Query: 192 FTVXGIPQLDELEKALAVXGLXXPWIRNEAWRYXP 296
           + V  +PQL E+++AL   GL  PW+RNE WRY P
Sbjct: 17  YKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEP 51


>UniRef50_UPI0000586C08 Cluster: PREDICTED: similar to NADH
           dehydrogenase, putative; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to NADH
           dehydrogenase, putative - Strongylocentrotus purpuratus
          Length = 89

 Score = 44.8 bits (101), Expect = 0.004
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 192 FTVXGIPQLDELEKALAVXGLXXPWIRNEAWRYXP 296
           + V  +P+L  +++ LA+ GL  PW+RNE WRY P
Sbjct: 14  YKVEDVPKLKAVQEKLALRGLKDPWLRNEVWRYQP 48


>UniRef50_Q5BQW1 Cluster: SJCHGC09788 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09788 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 94

 Score = 43.6 bits (98), Expect = 0.008
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = +3

Query: 210 PQLDELEKALAVXGLXXPWIRNEAWRYXPGIWHS 311
           P L E  K LA  GL  PWIRN AWRY P I+ S
Sbjct: 18  PALQEHVKKLAKLGLRDPWIRNYAWRYSPKIYKS 51


>UniRef50_O43676 Cluster: NADH dehydrogenase [ubiquinone] 1 beta
           subcomplex subunit 3; n=23; Euteleostomi|Rep: NADH
           dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 -
           Homo sapiens (Human)
          Length = 98

 Score = 42.3 bits (95), Expect = 0.019
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +3

Query: 189 RFTVXGIPQLDELEKALAVXGLXXPWIRNEAWRYXPGIWHSLADS 323
           ++ + G P L+ ++K LA  GL  PW RNEAWRY  G   S++ S
Sbjct: 21  QWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGFAKSVSFS 64


>UniRef50_Q4SNW8 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
           SCAF14542, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 84

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 22/51 (43%), Positives = 28/51 (54%)
 Frame = +3

Query: 204 GIPQLDELEKALAVXGLXXPWIRNEAWRYXPGIWHSLADSQXXLLYRIPXW 356
           G P L+  +K LA  GL  PW RNEAWRY  G   ++  S   +L+R   W
Sbjct: 22  GTP-LEFTQKRLAARGLKDPWARNEAWRYSGGFARAVTLSD--VLFRGFKW 69


>UniRef50_Q09JJ9 Cluster: NADH-dehydrogenase (Ubiquinone) 1
           beta-subcomplex 3; n=1; Argas monolakensis|Rep:
           NADH-dehydrogenase (Ubiquinone) 1 beta-subcomplex 3 -
           Argas monolakensis
          Length = 102

 Score = 38.7 bits (86), Expect = 0.23
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 192 FTVXGIPQLDELEKALAVXGLXXPWIRNEAWRY 290
           + V  +P+L ++++ LA  GL  PW+RNE W++
Sbjct: 19  YKVEDVPRLMQVKRELASYGLKDPWLRNEVWKF 51


>UniRef50_Q18095 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 103

 Score = 34.3 bits (75), Expect = 5.0
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 210 PQLDELEKALAVXGLXXPWIRNEAWRYXPGIWHSLADSQXXLLYRIPXW 356
           PQL + EK LA  GL  PWIRN  + Y     H +          +P W
Sbjct: 24  PQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLILPGW 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,216,424
Number of Sequences: 1657284
Number of extensions: 5308905
Number of successful extensions: 16420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16269
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 94306056537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)