Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J08
         (923 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding prote...    32   3.4  
AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.         32   3.4  
AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.        32   3.4  
BC002744-1|AAH02744.1|  279|Homo sapiens pleckstrin homology dom...    31   7.8  
AY037145-1|AAK67626.2|  279|Homo sapiens apoptosis-inducing prot...    31   7.8  
AK027758-1|BAB55349.1|  279|Homo sapiens protein ( Homo sapiens ...    31   7.8  
AF434818-1|AAL30773.1|  279|Homo sapiens phafin 1 protein.             31   7.8  

>BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding
           protein-like protein.
          Length = 481

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 52  FASSAGNHEVCLDSWLGL*PSRSAVQYQNRAP*SQKMWMPYLLKSKRKFCPSSKM 216
           F  S GN EVC   WLGL  +R+++   +R P   K ++    + KR + P  ++
Sbjct: 98  FLQSRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQV 151


>AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.
          Length = 318

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 52  FASSAGNHEVCLDSWLGL*PSRSAVQYQNRAP*SQKMWMPYLLKSKRKFCPSSKM 216
           F  S GN EVC   WLGL  +R+++   +R P   K ++    + KR + P  ++
Sbjct: 24  FLQSRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQV 77


>AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.
          Length = 481

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 52  FASSAGNHEVCLDSWLGL*PSRSAVQYQNRAP*SQKMWMPYLLKSKRKFCPSSKM 216
           F  S GN EVC   WLGL  +R+++   +R P   K ++    + KR + P  ++
Sbjct: 98  FLQSRGN-EVCRKIWLGLFDARTSLVPNSRDPQKVKEFLQEKYEKKRWYVPPDQV 151


>BC002744-1|AAH02744.1|  279|Homo sapiens pleckstrin homology domain
           containing, family F (with FYVE domain) member 1
           protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 104 CSRRAQ-QCSTKTEHHKVKKCGCRIC*KAKENSVLLPRCEP 223
           C R  Q + S  T  H  +KCG  +C +      LLPR  P
Sbjct: 158 CMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSP 198


>AY037145-1|AAK67626.2|  279|Homo sapiens apoptosis-inducing protein
           protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 104 CSRRAQ-QCSTKTEHHKVKKCGCRIC*KAKENSVLLPRCEP 223
           C R  Q + S  T  H  +KCG  +C +      LLPR  P
Sbjct: 158 CMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSP 198


>AK027758-1|BAB55349.1|  279|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14852 fis, clone PLACE1000786. ).
          Length = 279

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 104 CSRRAQ-QCSTKTEHHKVKKCGCRIC*KAKENSVLLPRCEP 223
           C R  Q + S  T  H  +KCG  +C +      LLPR  P
Sbjct: 158 CMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSP 198


>AF434818-1|AAL30773.1|  279|Homo sapiens phafin 1 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 104 CSRRAQ-QCSTKTEHHKVKKCGCRIC*KAKENSVLLPRCEP 223
           C R  Q + S  T  H  +KCG  +C +      LLPR  P
Sbjct: 158 CMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSP 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,270,860
Number of Sequences: 237096
Number of extensions: 2164815
Number of successful extensions: 3596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3596
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)