Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J07
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
 Frame = +3

Query: 483 GXPPPPPPKXXXGXXXPPAXTGXXPP----XGGNXVSPKPXGXPXKTI 614
           G PPPPPP    G   PP      PP     G    +P P   P   I
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP--PPPPAVSAGGSRYYAPAPQAEPEPKI 805



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 450 PPXXGGGGXXXGXPPPPPPKXXXG 521
           PP  G  G     PPPPPP    G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 450 PPXXGGGGXXXGXPPPPPP 506
           PP    G    G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +3

Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
           PP   G       PPPPPP+       P       PP G +   P P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIP------LPPQGRSAPPPPP 365


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 483 GXPPPPPPKXXXGXXXPPAXTGXXPPXG 566
           G PPPPPP        PP+     PP G
Sbjct: 7   GNPPPPPPPP---GFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,023
Number of Sequences: 5004
Number of extensions: 20075
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)