Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_J07
(945 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 36 0.052
At1g15830.1 68414.m01900 expressed protein 35 0.068
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 34 0.16
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 33 0.21
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 33 0.21
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 33 0.21
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 33 0.28
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 33 0.28
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 33 0.36
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 33 0.36
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 32 0.48
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 32 0.64
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 32 0.64
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 32 0.64
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 0.84
At1g61080.1 68414.m06877 proline-rich family protein 31 0.84
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 31 1.1
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 1.5
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 31 1.5
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 30 1.9
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 30 1.9
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 30 1.9
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 1.9
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 2.6
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 4.5
At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family... 29 4.5
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 29 5.9
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 5.9
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 5.9
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 28 7.8
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 7.8
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 28 7.8
At1g26250.1 68414.m03202 proline-rich extensin, putative similar... 28 7.8
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 25 9.4
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 35.5 bits (78), Expect = 0.052
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTG---XXPPXGGNXVSPKPXG 596
PP GGG P PP G PP G PP GG P P G
Sbjct: 655 PPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPG 706
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPP---PPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PP GG P PP P PP G PP GG P P
Sbjct: 654 PPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPP 703
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPP----PPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PP GGG PP PPPP PP GGN V P
Sbjct: 672 PPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAP 722
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PP GGG P PPPK G P G PP G P G P
Sbjct: 123 PPPIRGGGGEPAIPGAPPPK--RGGGGEPVIPGAPPPKRGGGGEPVIPGAP 171
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PP GGGG P PPPK G P G PP G P G P
Sbjct: 140 PPKRGGGGEPV-IPGAPPPK--RGGGGEPVIPGAPPPKRGGGGEPVIPGAP 187
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PP GGGG P PPPK G P G PP G P G P
Sbjct: 156 PPKRGGGGEPV-IPGAPPPK--RGGGGEPVIPGAPPPKRGGGGEPVIPGAP 203
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PP GGGG P PPPK G P G PP G P G P
Sbjct: 172 PPKRGGGGEPV-IPGAPPPK--RGGGGEPVIPGAPPPKRGGGGEPVIPGAP 219
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PP GGGG P PPPK G P G PP G P G P
Sbjct: 188 PPKRGGGGEPV-IPGAPPPK--RGGGGEPVIPGAPPPKRGGGGEPVIPGAP 235
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXK 608
PP GGGG P PPPK G P P GG S P P K
Sbjct: 204 PPKRGGGGEPV-IPGAPPPK-RGGGGEPVIPGAPLPKRGGGGESVVPGAPPPK 254
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/67 (31%), Positives = 22/67 (32%)
Frame = +3
Query: 402 SXSXGXXGRFFXXXXTPPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVS 581
S + G G PP GGG PPP G PA G PP G
Sbjct: 93 SATRGGGGEPVIPGAPPPNRGGGETVIPGAPPP----IRGGGGEPAIPGAPPPKRGGGGE 148
Query: 582 PKPXGXP 602
P G P
Sbjct: 149 PVIPGAP 155
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -3
Query: 559 GGXXPVXAGGXXXPXXFLGGGGGGXPXXKPPPPXXGGV 446
GG PV G P GGGG PPP GGV
Sbjct: 225 GGGEPVIPGA---PLPKRGGGGESVVPGAPPPKRGGGV 259
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXP 629
PP G PPPPPP PP PP V P P G T P
Sbjct: 701 PPPLPPSSTRLGAPPPPPPPPLSKTPAPP-----PPPLSKTPVPPPPPGLGRGTSSGPPP 755
Query: 630 XG 635
G
Sbjct: 756 LG 757
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXPKT 650
PPPPPPK P PP +P P P + P KT
Sbjct: 683 PPPPPPKANISNAPKPPAPPPLPPSSTRLGAPPPPPPPPLSKTPAPPPPPLSKT 736
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP 560
PP G G PPPPP P A PP
Sbjct: 625 PPSFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPPPP 661
Score = 25.4 bits (53), Expect(2) = 4.8
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Frame = +3
Query: 489 PPPPPP-----KXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PPPPPP G P PP +PKP P
Sbjct: 660 PPPPPPTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPPAPP 702
Score = 23.4 bits (48), Expect(2) = 8.0
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPP 506
PP G PPPPPP
Sbjct: 471 PPSSGDHVTLLPPPPPPPP 489
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPP 560
PPPPPP P+ PP
Sbjct: 528 PPPPPPLFTSTTSFSPSQPPPPPP 551
Score = 21.8 bits (44), Expect(2) = 4.8
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPP 506
PP PPPPPP
Sbjct: 605 PPPSSRSIPSPSAPPPPPP 623
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPP---AXTGXXPPXGGNXVSP 584
PP G G PPP PP G PP + + PP G + SP
Sbjct: 5 PPSSQGYGYGGNPPPPQPPYGSTGNNPPPYGSSGSNPPPPYGSSASSP 52
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPP---AXTGXXPPXGGNXVSP 584
PP G G PPP PP G PP + + PP G + SP
Sbjct: 5 PPSSQGYGYGGNPPPPQPPYGSTGNNPPPYGSSGSNPPPPYGSSASSP 52
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPP---AXTGXXPPXGGNXVSP 584
PP G G PPP PP G PP + + PP G + SP
Sbjct: 5 PPSSQGYGYGGNPPPPQPPYGSTGNNPPPYGSSGSNPPPPYGSSASSP 52
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP-XGGNXVSPKPXG 596
PP G PPPPP K G PP + PP GN P G
Sbjct: 397 PPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNPKGPTKSG 446
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Frame = +3
Query: 432 FXXXXTPPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTG-----XXPPXGGNXVSPKP 590
F PP G PPPPPP PP G PP G P P
Sbjct: 366 FTTANAPPAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPPP 423
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 492 PPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXPKTA 653
PP PPK PP PP P P P T P G PK A
Sbjct: 69 PPTPPKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPA 122
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXP 644
PPPPPP PP PP + P P P + S P P
Sbjct: 438 PPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPP 489
Score = 31.5 bits (68), Expect = 0.84
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXP 629
PPPPPP PP + PP P P P + S P
Sbjct: 468 PPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPP 514
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXP 644
PPPPPP PP PP + P P P P P
Sbjct: 454 PPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPP 505
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPP 560
PPPPPP PP + PP
Sbjct: 501 PPPPPPPPVYSPPPPPVYSSPPPP 524
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 483 GXPPPPPPKXXXGXXXPPAXTGXXPP 560
G PPPPPP PP +G PP
Sbjct: 228 GLPPPPPPPPHQAQPPPPPPSGLFPP 253
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 453 PXXGGGGXXXGXPPPPPPKXXXGXXXPPA--XTGXXPPXGGNXVSPKP 590
P G PPPPPP PP+ PP N P P
Sbjct: 220 PQSAVGANGLPPPPPPPPHQAQPPPPPPSGLFPPPPPPMANNGFRPMP 267
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 32.3 bits (70), Expect = 0.48
Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP-----XGGNXVSPKPXGXPXKTI 614
PP GGGG PPP G P G PP GG SP P P +
Sbjct: 40 PPQHGGGGGGGSKPPPHHGGKGGGKPPPHGGKGGGPPHHGGGGGGGGKSP-PVVRPPPVV 98
Query: 615 XSXXPXGXXPKTAF 656
P P +
Sbjct: 99 VRPPPIIRPPPVVY 112
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = -3
Query: 559 GGXXPVXAGGXXXPXXFLGGGGGG---XPXXKPPP 464
GG P G P GGGGGG P +PPP
Sbjct: 62 GGKPPPHGGKGGGPPHHGGGGGGGGKSPPVVRPPP 96
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PPPPPP---KXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXPKT 650
PPPPPP + PP PP P+P P KT S P KT
Sbjct: 31 PPPPPPLMRRRAPPPPPPPLMRRRAPPPPPPPPLPRPCSRPPKTKCSLKPLHWVKKT 87
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP--XGGNXVSPKPXG 596
PP GG G G PPPP G PP PP G + P P G
Sbjct: 168 PPPFGGQGPPMGRGPPPP----YGMRPPPQQFSGPPPPQYGQRPMIPPPGG 214
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +3
Query: 468 GGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
GG G PPPP G PP PP G P+P P
Sbjct: 213 GGMMRGPPPPP-----HGMQGPPPPRPGMPPAPGGFAPPRPGMPP 252
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP--XGGNXVSPKPXG 596
PP GG G G PPPP G PP PP G + P P G
Sbjct: 168 PPPFGGQGPPMGRGPPPP----YGMRPPPQQFSGPPPPQYGQRPMIPPPGG 214
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +3
Query: 468 GGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
GG G PPPP G PP PP G P+P P
Sbjct: 213 GGMMRGPPPPP-----HGMQGPPPPRPGMPPAPGGFAPPRPGMPP 252
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPP-------PPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PP GG PPP PPP G PP+ G PP G +P G P
Sbjct: 188 PPQYGGQQRPMMIPPPGGMMRGPPPPHGMQGP--PPSRPGMPPPGGAPMFAPPHPGMP 243
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXP 644
PPPPPP PP PP G +P P P T + P P
Sbjct: 523 PPPPPPPPRAAVAPPP-----PPPPPGTAAAPPPPPPPPGTQAAPPPPPPPP 569
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PP G G PPPPPP PP G P P
Sbjct: 578 PPMPMGNSGSGGPPPPPPPMPLANGATPPPPPPPMAMANGAAGPPPP 624
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXPKT 650
PPPPPP PP PP V+P P P T + P P T
Sbjct: 509 PPPPPPPLPTTIAAPP----PPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGT 558
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PP G PPPPPP PP PP SP P
Sbjct: 537 PPPPPPPGTAAAPPPPPPPPGTQAAPPPP----PPPPMQNRAPSPPP 579
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PP G PPPPPP PP GG P P
Sbjct: 550 PPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPPP 596
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPPPPPP--KXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
+PP G G PPPPPP G PP G P P
Sbjct: 576 SPPPMPMGNSGSGGPPPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPP 625
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP 560
TPP G PPPPPP PP +G PP
Sbjct: 14 TPPMRG----RVPLPPPPPPPMRRSAPSPPPMSGRVPP 47
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +3
Query: 465 GGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
G G PPPPPP PP G PP G P G P
Sbjct: 38 GYGSSYPYPPPPPPHGYPPVAYPP--HGGYPPAGYPPAGYPPAGYP 81
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTG------XXPPXGGNXVSPKP 590
PP GG PPPP G PP G PP GN +P P
Sbjct: 54 PPPSSSGGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPP 106
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPPPP-PPKXXXGXXXPPAXTGXXPPXGGNXVSPK-PXGXPXKTIXS 620
TP G P PP PP+ PP T PP G +P P P K
Sbjct: 741 TPQSNGISAMKSSPPAPPAPPRLPTHSASPPPPTAPPPPPLGQTRAPSAPPPPPPKLGTK 800
Query: 621 XXPXG 635
P G
Sbjct: 801 LSPSG 805
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXP-PAXTGXXP-PXGGNXVSPKPXGXPXKTIXSXXPXGXXP 644
PPPP P G P P+ P P G SP P P + S P P
Sbjct: 175 PPPPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSPSPTPGPDSPLPSPGPDSPLP 228
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXG 596
PP PPPPPPK PP PP +PK G
Sbjct: 265 PPPPPAAAPPPQPPPPPPPKP---QPPPPPKIARPPPAPPKGAAPKRQG 310
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
PPPPPP PP PP V P P P
Sbjct: 380 PPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPP 417
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 426 RFFXXXXTPPXXGGGGXXXGXPPPPPPKXXXG 521
R+ +PP G GG PPPPP + G
Sbjct: 3 RYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGG 34
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTIXSXXPXGXXP 644
PPPPPP PP + PP P P P + S P P
Sbjct: 533 PPPPPPPVHS--PPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPPVYSP 582
>At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 161
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPPXGGNXVS-PKP 590
TPP GG PPP P P PP GN + P P
Sbjct: 39 TPPIGGGSSTPSMTQPPPYPPPGVNYPTPAGNLPNYPPPVGNIPNYPSP 87
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTGXXPP--XGGNXVSPKPXGXPXKTIXSX 623
PP GG P PP+ G PP G PP GG + G P
Sbjct: 284 PPPNNMGGPRHPPPYGAPPQNNMGGPRPPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGG 343
Query: 624 XP 629
P
Sbjct: 344 PP 345
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Frame = +3
Query: 483 GXPPP----PPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXP 602
G PPP PP G PP G PP G P+ G P
Sbjct: 317 GTPPPNYGGAPPANNMGGAPPPNYGGGPPPQYGAVPPPQYGGAP 360
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPP----PPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTI 614
TPP PP PPP PP PP +P P P +
Sbjct: 38 TPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPPV 97
Query: 615 XSXXPXGXXP 644
S P P
Sbjct: 98 ASPPPATPPP 107
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPP----PPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKPXGXPXKTI 614
TPP PP PPP PP PP +P P P +
Sbjct: 38 TPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPPV 97
Query: 615 XSXXPXGXXP 644
S P P
Sbjct: 98 ASPPPATPPP 107
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Frame = +3
Query: 447 TPPXXGGGGXXXGXPPPPPPKXXXGXXXPPAXTG------XXPPXGGNXVSPKP 590
+PP GGG PPP + G PP G PP GN +P P
Sbjct: 70 SPPSSGGGSSYYY---PPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPP 120
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGG-NXVSPKP 590
PPPPP PP G PP G + SP P
Sbjct: 801 PPPPPVIHHSQPPPPPIYEGPLPPIPGISYASPPP 835
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PPPPPP+ P PP + ++P P
Sbjct: 70 PPPPPPQSLPPPSPSPEPEHYPPPPYHHYITPSP 103
>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 443
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXTGXXPPXGGNXVSPKP 590
PPPPPP PP PP SP P
Sbjct: 169 PPPPPPYVYQSPPPPPYVYSSPPPPPYVYKSPPP 202
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 489 PPPPPPKXXXGXXXPPAXT 545
PPPPPP PP T
Sbjct: 121 PPPPPPPPPPPTITPPVTT 139
Score = 21.8 bits (44), Expect(2) = 9.4
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +3
Query: 450 PPXXGGGGXXXGXPPPPPP 506
P G PPPPPP
Sbjct: 85 PATTNSGHHQLRPPPPPPP 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,734
Number of Sequences: 28952
Number of extensions: 228958
Number of successful extensions: 2228
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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